Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_F22
(790 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 197 6e-51
At1g50730.1 68414.m05705 expressed protein 31 0.66
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 29 2.7
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 29 2.7
At3g12360.1 68416.m01541 ankyrin repeat family protein contains ... 29 2.7
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 29 2.7
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 29 2.7
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s... 28 6.1
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s... 28 6.1
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 28 8.1
At2g37050.1 68415.m04546 leucine-rich repeat family protein / pr... 28 8.1
At1g31390.1 68414.m03843 meprin and TRAF homology domain-contain... 28 8.1
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP synthase
alpha chain, mitochondrial (EC 3.6.3.14) {Brassica
campestris}; contains Pfam profiles PF00006: ATP synthase
alpha/beta family nucleotide-binding domain, PF00306: ATP
synthase ab C terminal, PF02874: ATP synthase alpha/beta
family beta-barrel domain
Length = 777
Score = 197 bits (481), Expect = 6e-51
Identities = 104/163 (63%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Frame = -2
Query: 783 IPTXVISITDGQXFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQY 604
IPT VISITDGQ LETELFY+GIRPAINVGLSVSRVGSAAQ KAMKQV GS KLELAQY
Sbjct: 611 IPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSSKLELAQY 670
Query: 603 REVAAFAQFGSDLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLD 424
REVAAFAQFGSDLDAATQ LLNRG RLTE+ KQ QY P+ IE+Q+ +IY V G D++
Sbjct: 671 REVAAFAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMP 730
Query: 423 PSKITAFEKEFTQHIKTS-HQGLLSTIAKDGQITPESDASLKK 298
+I+ +EK +K Q L + + ++ P DA LK+
Sbjct: 731 LDRISQYEKAIPNSVKPELLQALKGGLTNERKMEP--DAFLKE 771
>At1g50730.1 68414.m05705 expressed protein
Length = 1013
Score = 31.5 bits (68), Expect = 0.66
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Frame = -2
Query: 564 DAATQQLLNR---GMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLDKLDPSKITAFE 400
D + Q+LN G RL+E Q ++ I+E Q A Y + +L +D +
Sbjct: 448 DCSFSQVLNYRLLGNRLSEGKSQEGFLSSLIDEVIQAASQYQSLYDYLRIMDAYVDLMLQ 507
Query: 399 KEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATFTQSQ 259
+ H+ ++S +A+D ++ E ASL+ I+ L+ F Q
Sbjct: 508 NKMENHLDALLDDIVS-LARDKFLSEEEQASLQSIILKLLSHFENLQ 553
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2
Query: 762 ITDGQXFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 646
IT+GQ +++ +L + I P INV S+SR+ +A + M
Sbjct: 349 ITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 387
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2
Query: 762 ITDGQXFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 646
IT+GQ +++ +L + I P INV S+SR+ +A + M
Sbjct: 349 ITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 387
>At3g12360.1 68416.m01541 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 590
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = -2
Query: 708 PAINVGLSVSRVGSAAQTKAMKQVAG---SMKLELAQYR-EVAAFAQFGSDLDAATQQLL 541
PA+ + S R+ A + K +KQV G +L LA R ++AA Q D+++ + +L
Sbjct: 46 PALVLSNSGKRMDQAGKKKYVKQVTGRHNDTELHLAAQRGDLAAVQQILKDINSQMEGIL 105
Query: 540 NRGMRLTELLKQGQYVPMAIEE--QVAIIYCGVRGHLD 433
+ E+ + + + E + A+ +GHLD
Sbjct: 106 SGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLD 143
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2
Query: 762 ITDGQXFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 646
IT+GQ +++ +L + I P INV S+SR+ +A + M
Sbjct: 348 ITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 386
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -2
Query: 762 ITDGQXFLETELFYKGIRPAINVGLSVSRVGSAAQTKAM 646
IT+GQ +++ +L + I P INV S+SR+ +A + M
Sbjct: 347 ITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM 385
>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial (TYKY) identical to SP|Q42599
NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 724 LQRYPTSHQRRSVCIACRIC 665
L+RYPT +R CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129
>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial, putative very strong similarity
to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
profile PF00037: iron-sulfur cluster-binding protein
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 724 LQRYPTSHQRRSVCIACRIC 665
L+RYPT +R CIAC++C
Sbjct: 113 LRRYPTGEER---CIACKLC 129
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 399 KEFTQHIKTSHQGLLSTIAKDGQIT 325
++ QH T H+GLLST KDG I+
Sbjct: 940 QQLFQHCHTHHEGLLST-KKDGMIS 963
>At2g37050.1 68415.m04546 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 934
Score = 27.9 bits (59), Expect = 8.1
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -2
Query: 777 TXVISITDGQXFLET-ELFYKGIRPAINVGLSVSRVGSA-AQTKAMKQVAGSMKLELAQ- 607
T VIS T +ET EL + P ++V LS + G T ++Q++GSM +
Sbjct: 128 TIVISET---YIIETAELVFLASSPTVSVCLSNATTGQPFISTLELRQLSGSMYGSMLSE 184
Query: 606 ---YREVAAFAQFGSDLDAATQ 550
Y VAA FG++ +A+ +
Sbjct: 185 DRFYLSVAARINFGAESEASVR 206
>At1g31390.1 68414.m03843 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 268
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 307 GGVRLGGDLTVFGDRGEKTLVASFDVLSEFLL--EGSDFGGVQLVEVTADTAVN 462
GG + GD+ + + G +V DVL E LL E D G Q++ ++ N
Sbjct: 120 GGFLVNGDVKIVVEVGVLEVVGKSDVLEETLLVHESIDINGFQVLPSQVESVNN 173
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,320
Number of Sequences: 28952
Number of extensions: 313159
Number of successful extensions: 884
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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