Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_F21
(824 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 64 1e-10
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 64 1e-10
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 64 1e-10
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 64 1e-10
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 64 1e-10
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 64 1e-10
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 62 3e-10
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 61 8e-10
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 61 8e-10
At1g21210.1 68414.m02651 wall-associated kinase 4 31 1.2
At5g62640.1 68418.m07862 proline-rich family protein contains pr... 29 3.7
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 29 5.0
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 29 5.0
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 29 5.0
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 29 5.0
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 29 5.0
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 29 5.0
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 8.7
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/69 (55%), Positives = 39/69 (56%)
Frame = -2
Query: 808 PXXGXKMXATFXR*LXPPXRSCSXASRXQLPAMFRRXLSCIGTPGEGMDEMEFTEAESNM 629
P G KM +TF S Q AMFRR GEGMDEMEFTEAESNM
Sbjct: 357 PPTGLKMASTFIGNSTSIQEMFRRVSE-QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 628 NDLVSEYQQ 602
NDLVSEYQQ
Sbjct: 416 NDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/69 (55%), Positives = 39/69 (56%)
Frame = -2
Query: 808 PXXGXKMXATFXR*LXPPXRSCSXASRXQLPAMFRRXLSCIGTPGEGMDEMEFTEAESNM 629
P G KM +TF S Q AMFRR GEGMDEMEFTEAESNM
Sbjct: 357 PPTGLKMASTFIGNSTSIQEMFRRVSE-QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 628 NDLVSEYQQ 602
NDLVSEYQQ
Sbjct: 416 NDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/69 (55%), Positives = 39/69 (56%)
Frame = -2
Query: 808 PXXGXKMXATFXR*LXPPXRSCSXASRXQLPAMFRRXLSCIGTPGEGMDEMEFTEAESNM 629
P G KM +TF S Q AMFRR GEGMDEMEFTEAESNM
Sbjct: 357 PPTGLKMASTFIGNSTSIQEMFRRVSE-QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 628 NDLVSEYQQ 602
NDLVSEYQQ
Sbjct: 416 NDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/69 (55%), Positives = 39/69 (56%)
Frame = -2
Query: 808 PXXGXKMXATFXR*LXPPXRSCSXASRXQLPAMFRRXLSCIGTPGEGMDEMEFTEAESNM 629
P G KM +TF S Q AMFRR GEGMDEMEFTEAESNM
Sbjct: 357 PPTGLKMASTFIGNSTSIQEMFRRVSE-QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415
Query: 628 NDLVSEYQQ 602
NDLVSEYQQ
Sbjct: 416 NDLVSEYQQ 424
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/69 (55%), Positives = 39/69 (56%)
Frame = -2
Query: 808 PXXGXKMXATFXR*LXPPXRSCSXASRXQLPAMFRRXLSCIGTPGEGMDEMEFTEAESNM 629
P G KM +TF S Q AMFRR GEGMDEMEFTEAESNM
Sbjct: 358 PPTGIKMASTFVGNSTSIQEMFRRVSE-QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416
Query: 628 NDLVSEYQQ 602
NDLVSEYQQ
Sbjct: 417 NDLVSEYQQ 425
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/69 (55%), Positives = 39/69 (56%)
Frame = -2
Query: 808 PXXGXKMXATFXR*LXPPXRSCSXASRXQLPAMFRRXLSCIGTPGEGMDEMEFTEAESNM 629
P G KM ATF S Q AMFRR GEGMDEMEFTEAESNM
Sbjct: 358 PPKGLKMAATFVGNSTSIQEMFRRVSE-QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416
Query: 628 NDLVSEYQQ 602
NDLV+EYQQ
Sbjct: 417 NDLVAEYQQ 425
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/41 (75%), Positives = 31/41 (75%)
Frame = -2
Query: 724 QLPAMFRRXLSCIGTPGEGMDEMEFTEAESNMNDLVSEYQQ 602
Q AMFRR GEGMDEMEFTEAESNMNDLVSEYQQ
Sbjct: 384 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 752 QELFXRISXXVTRYVQAXAFLHWYT 678
QE+F R+S T + AFLHWYT
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYT 399
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/41 (73%), Positives = 31/41 (75%)
Frame = -2
Query: 724 QLPAMFRRXLSCIGTPGEGMDEMEFTEAESNMNDLVSEYQQ 602
Q AMFRR GEGMDEMEFTEAESNMNDLV+EYQQ
Sbjct: 384 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 752 QELFXRISXXVTRYVQAXAFLHWYT 678
QE+F R+S T + AFLHWYT
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYT 399
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/41 (73%), Positives = 31/41 (75%)
Frame = -2
Query: 724 QLPAMFRRXLSCIGTPGEGMDEMEFTEAESNMNDLVSEYQQ 602
Q AMFRR GEGMDEMEFTEAESNMNDLV+EYQQ
Sbjct: 384 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -1
Query: 752 QELFXRISXXVTRYVQAXAFLHWYT 678
QE+F R+S T + AFLHWYT
Sbjct: 375 QEMFRRVSEQFTAMFRRKAFLHWYT 399
>At1g21210.1 68414.m02651 wall-associated kinase 4
Length = 738
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 513 RLVKGLSCPRSPAPAPRQTLRPRRRWPPGYCWYSETRSFMLLSASVN 653
+LVKG + PR P TL + PG CW +E SF L + N
Sbjct: 18 QLVKGQTLPRCPEKCGNVTLEYPFGFSPG-CWRAEDPSFNLSCVNEN 63
>At5g62640.1 68418.m07862 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 520
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Frame = +3
Query: 540 RSPAPAPRQTLRPRRRWPPGYCW------YSETRSFML---LSASVNSISSMPSPGVPMQ 692
R P P P Q + + PPG + E+ F ++A++ S+ +P PG+P
Sbjct: 234 RPPLPPPPQLPQSSQPPPPGLSGSQGDGRFPESSDFTFDNRMNANITSVPLLPPPGIPSN 293
Query: 693 ES 698
ES
Sbjct: 294 ES 295
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 676 GEGMDEMEFTEAESNMNDLVSEYQQ 602
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 676 GEGMDEMEFTEAESNMNDLVSEYQQ 602
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 676 GEGMDEMEFTEAESNMNDLVSEYQQ 602
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 676 GEGMDEMEFTEAESNMNDLVSEYQQ 602
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 676 GEGMDEMEFTEAESNMNDLVSEYQQ 602
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 676 GEGMDEMEFTEAESNMNDLVSEYQQ 602
GEGM+E EF+EA ++ L +Y++
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEE 434
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 525 GLSCPRSPAPAPRQTLRPRRRWP 593
GLS PR +P PR+ L PRRR P
Sbjct: 225 GLS-PRRRSPLPRRGLSPRRRSP 246
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,632
Number of Sequences: 28952
Number of extensions: 250300
Number of successful extensions: 694
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -