BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_F20 (803 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002 SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) 36 0.029 SB_50352| Best HMM Match : BBE (HMM E-Value=0.72) 30 2.5 SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) 29 5.8 SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 28 7.7 >SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 645 Score = 39.9 bits (89), Expect = 0.002 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = -1 Query: 773 IDATAMXXXITIXRXXFPTIXXSL-RQLQEPQRYNGGRAXEDFIKYVSEQATSEL 612 IDATA T FPTI + + + P +++GGR +D IK+V E+AT L Sbjct: 581 IDATANDVPSTYAVEGFPTIYFATSKDKKNPIKFDGGRELKDLIKFVEEKATVSL 635 >SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0) Length = 295 Score = 36.3 bits (80), Expect = 0.029 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -1 Query: 725 FPTIXXSLRQLQEPQRYNGGRAXEDFIKYVSEQ 627 FPTI + P+ YNGGR DFIK++ E+ Sbjct: 96 FPTIKYFPKGSTTPEEYNGGRDINDFIKFIEEK 128 >SB_50352| Best HMM Match : BBE (HMM E-Value=0.72) Length = 344 Score = 29.9 bits (64), Expect = 2.5 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +3 Query: 105 YKWTSQLM*LIYHPQVEVYQYTTYDNT-SDFYKNVYYFLTKRSKMLSYICAPYTESNER 278 Y T +M L VY T + + Y LT +S+M+ + C P T NER Sbjct: 82 YTLTGNIMMLTKLIYTAVYTLIVKTRTRTRIIRTAVYILTGKSRMIKFRCVPVTYFNER 140 >SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0) Length = 536 Score = 28.7 bits (61), Expect = 5.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 725 FPTIXXSLRQLQEPQRYNGGRAXEDFIKYV 636 FPTI ++ E YNGGR +DF+K++ Sbjct: 457 FPTIKYFPKE-GEAVDYNGGRTLDDFVKFL 485 >SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 557 Score = 28.3 bits (60), Expect = 7.7 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +1 Query: 499 HPSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSET-YLMKSSXARPPL 675 HP +KY R +S + Y PC+ P LS V+ S T LM S ++ Sbjct: 391 HPDYKYRPRRKPKSLLKKTDRYPFPLPCIPTP---DELSKCVSLSSTSSLMSDSYSKARS 447 Query: 676 YL 681 Y+ Sbjct: 448 YM 449 >SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) Length = 179 Score = 28.3 bits (60), Expect = 7.7 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +1 Query: 499 HPSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSET-YLMKSSXARPPL 675 HP +KY R +S + Y PC+ P LS V+ S T LM S ++ Sbjct: 74 HPDYKYRPRRKPKSLLKKTDRYPFPLPCIPTP---DELSKCVSLSSTSSLMSDSYSKARS 130 Query: 676 YL 681 Y+ Sbjct: 131 YM 132 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,323,939 Number of Sequences: 59808 Number of extensions: 455857 Number of successful extensions: 1067 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 932 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1060 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2227723674 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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