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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F20
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 36   0.029
SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)                      30   2.5  
SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 29   5.8  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)               28   7.7  

>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -1

Query: 773 IDATAMXXXITIXRXXFPTIXXSL-RQLQEPQRYNGGRAXEDFIKYVSEQATSEL 612
           IDATA     T     FPTI  +  +  + P +++GGR  +D IK+V E+AT  L
Sbjct: 581 IDATANDVPSTYAVEGFPTIYFATSKDKKNPIKFDGGRELKDLIKFVEEKATVSL 635


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 725 FPTIXXSLRQLQEPQRYNGGRAXEDFIKYVSEQ 627
           FPTI    +    P+ YNGGR   DFIK++ E+
Sbjct: 96  FPTIKYFPKGSTTPEEYNGGRDINDFIKFIEEK 128


>SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)
          Length = 344

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 105 YKWTSQLM*LIYHPQVEVYQYTTYDNT-SDFYKNVYYFLTKRSKMLSYICAPYTESNER 278
           Y  T  +M L       VY       T +   +   Y LT +S+M+ + C P T  NER
Sbjct: 82  YTLTGNIMMLTKLIYTAVYTLIVKTRTRTRIIRTAVYILTGKSRMIKFRCVPVTYFNER 140


>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 725 FPTIXXSLRQLQEPQRYNGGRAXEDFIKYV 636
           FPTI    ++  E   YNGGR  +DF+K++
Sbjct: 457 FPTIKYFPKE-GEAVDYNGGRTLDDFVKFL 485


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 499 HPSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSET-YLMKSSXARPPL 675
           HP +KY  R   +S   +   Y    PC+  P     LS  V+ S T  LM  S ++   
Sbjct: 391 HPDYKYRPRRKPKSLLKKTDRYPFPLPCIPTP---DELSKCVSLSSTSSLMSDSYSKARS 447

Query: 676 YL 681
           Y+
Sbjct: 448 YM 449


>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
          Length = 179

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +1

Query: 499 HPSHKYTRRSFMESFESQQHAYNSSFPCLALPFLSQPLSSLVACSET-YLMKSSXARPPL 675
           HP +KY  R   +S   +   Y    PC+  P     LS  V+ S T  LM  S ++   
Sbjct: 74  HPDYKYRPRRKPKSLLKKTDRYPFPLPCIPTP---DELSKCVSLSSTSSLMSDSYSKARS 130

Query: 676 YL 681
           Y+
Sbjct: 131 YM 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,323,939
Number of Sequences: 59808
Number of extensions: 455857
Number of successful extensions: 1067
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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