Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F18
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa...    32   0.56 
At3g05130.1 68416.m00557 expressed protein ; expression supporte...    31   1.3  
At2g38100.1 68415.m04677 proton-dependent oligopeptide transport...    29   3.0  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    29   5.2  
At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / he...    28   6.9  
At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / he...    28   6.9  
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi...    28   6.9  

>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); weak similarity to
           interaptin (GI:3549261) [Dictyostelium discoideum] weak
           similarity to Axoneme-associated protein mst101(2)
           (Swiss-Prot:Q08696) [Drosophila hydei]
          Length = 711

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = -3

Query: 565 AQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKR 386
           A+K+KI  L   L Q+T+  K++    A  R E    E+ L A ME  Q ++++A+G  +
Sbjct: 517 AEKEKIKALYKTLAQITEYEKEI---EAKWRQEQKAKEEAL-AQMEEEQRSKEAAEGHNK 572

Query: 385 R 383
           R
Sbjct: 573 R 573


>At3g05130.1 68416.m00557 expressed protein ; expression supported
           by MPSS
          Length = 634

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 568 LAQKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQG 416
           + QK  I  LE  L++L +  + L ++   LR  V  LEK L  +ME+  G
Sbjct: 274 IEQKGVIEELERKLDKLNETVRSLTKEEKVLRDLVIGLEKNLDESMEKESG 324


>At2g38100.1 68415.m04677 proton-dependent oligopeptide transport
           (POT) family protein low similarity to SP|P46032 Peptide
           transporter PTR2-B (Histidine transporting protein)
           {Arabidopsis thaliana}; contains Pfam profile PF00854:
           POT family
          Length = 521

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +1

Query: 352 ELVSFAIAHCTVFCFLERCLECLXHV-PWWLGVVSPAWALRIAGRHCHARAACGLSSVAP 528
           +LVSF I +   F FL      +  + PW++    P+    +         AC    V P
Sbjct: 133 KLVSFVIGNVGNFVFLLLAAIAMPQISPWFVRFTIPS-GCEVLAMLIFISGACSYKRVKP 191

Query: 529 GYSPRTRSF 555
           G SP T  F
Sbjct: 192 GGSPLTTVF 200


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -3

Query: 559 KQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKRRC 380
           K  ++  EN L    +VH+   RD++    +V +LE R+ +  E+V+    +   S+   
Sbjct: 547 KDTLTQKENELSSFVEVHEAHKRDSSS---QVKELEARVESAEEQVKELNQNLNSSEEEK 603

Query: 379 NARSQTI 359
              SQ I
Sbjct: 604 KILSQQI 610


>At5g16820.2 68418.m01971 heat shock factor protein 3 (HSF3) / heat
           shock transcription factor 3 (HSTF3) identical to heat
           shock transcription factor 3 (HSF3) SP:O81821 from
           [Arabidopsis thaliana]
          Length = 481

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/98 (21%), Positives = 42/98 (42%)
 Frame = -3

Query: 562 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKRR 383
           Q+Q +SFL   ++    +++ + ++N D   ++P   K+ R  ++  +   D+      R
Sbjct: 193 QQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNR 252

Query: 382 CNARSQTIPVRSGQNQGSRAR*KSCSPRSTGPNREADT 269
              R Q     + QN   +    S SPR    +   D+
Sbjct: 253 QIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDS 290


>At5g16820.1 68418.m01970 heat shock factor protein 3 (HSF3) / heat
           shock transcription factor 3 (HSTF3) identical to heat
           shock transcription factor 3 (HSF3) SP:O81821 from
           [Arabidopsis thaliana]
          Length = 481

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/98 (21%), Positives = 42/98 (42%)
 Frame = -3

Query: 562 QKQKISFLENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSAQGSKRR 383
           Q+Q +SFL   ++    +++ + ++N D   ++P   K+ R  ++  +   D+      R
Sbjct: 193 QQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNR 252

Query: 382 CNARSQTIPVRSGQNQGSRAR*KSCSPRSTGPNREADT 269
              R Q     + QN   +    S SPR    +   D+
Sbjct: 253 QIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDS 290


>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 556 QKISFL-ENNLEQLTKVHKQLVRDNADLRCEVPKLEKRLRATMERVQGTRDSA 401
           Q+++F+ EN   +L K+  +  +D+  L+ E  + EK LRA  E + G +  +
Sbjct: 262 QRLNFMVENKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKS 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,917,187
Number of Sequences: 28952
Number of extensions: 193215
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)