Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_F17
(844 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 243 1e-64
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 243 1e-64
SB_56| Best HMM Match : Actin (HMM E-Value=0) 243 1e-64
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 243 2e-64
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 241 4e-64
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 241 5e-64
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 213 2e-55
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 80 2e-15
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 6e-15
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 69 4e-12
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 3e-09
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.008
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 2.7
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 28 8.2
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26) 28 8.2
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 243 bits (595), Expect = 1e-64
Identities = 112/118 (94%), Positives = 116/118 (98%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI
Sbjct: 221 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 280
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 281 SALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/75 (50%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -2
Query: 831 GXLVXTPREREXVXTXRRSWVX-RFXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFR 655
G T ERE V + FEQEM AS SLEK YE PDGQVITIGNERFR
Sbjct: 160 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFR 219
Query: 654 CPRGSLPTLVLGYGS 610
CP LG S
Sbjct: 220 CPEAMFQPSFLGMES 234
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 243 bits (595), Expect = 1e-64
Identities = 112/118 (94%), Positives = 116/118 (98%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 318
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
T+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 319 TSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/75 (50%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -2
Query: 831 GXLVXTPREREXVXTXRRSWVX-RFXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFR 655
G T ERE V + FEQEM AS SLEK YE PDGQVITIGNERFR
Sbjct: 198 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMETAASSSSLEKSYELPDGQVITIGNERFR 257
Query: 654 CPRGSLPTLVLGYGS 610
CP LG S
Sbjct: 258 CPEAMFQPSFLGMES 272
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 243 bits (595), Expect = 1e-64
Identities = 112/118 (94%), Positives = 116/118 (98%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 317
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
T+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 318 TSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/75 (50%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -2
Query: 831 GXLVXTPREREXVXTXRRSWVX-RFXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFR 655
G T ERE V + FEQEM AS SLEK YE PDGQVITIGNERFR
Sbjct: 197 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFR 256
Query: 654 CPRGSLPTLVLGYGS 610
CP LG S
Sbjct: 257 CPEAMFQPSFLGMES 271
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 243 bits (594), Expect = 2e-64
Identities = 112/118 (94%), Positives = 116/118 (98%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 318
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 319 SALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Score = 67.7 bits (158), Expect = 1e-11
Identities = 38/75 (50%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -2
Query: 831 GXLVXTPREREXVXTXRRSWVX-RFXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFR 655
G T ERE V + FEQEM AS SLEK YE PDGQVITIGNERFR
Sbjct: 198 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFR 257
Query: 654 CPRGSLPTLVLGYGS 610
CP LG S
Sbjct: 258 CPEAMFQPSFLGMES 272
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 241 bits (591), Expect = 4e-64
Identities = 111/118 (94%), Positives = 116/118 (98%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEAL QPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTV+SGGTTMYPG+ADRMQKEI
Sbjct: 232 PEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEI 291
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 292 SALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
Score = 67.7 bits (158), Expect = 1e-11
Identities = 38/75 (50%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -2
Query: 831 GXLVXTPREREXVXTXRRSWVX-RFXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFR 655
G T ERE V + FEQEM AS S+EK YE PDGQVITIGNERFR
Sbjct: 171 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFR 230
Query: 654 CPRGSLPTLVLGYGS 610
CP L LG S
Sbjct: 231 CPEALLQPSFLGMES 245
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 241 bits (590), Expect = 5e-64
Identities = 111/118 (94%), Positives = 116/118 (98%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEA+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TM+PGIADRMQKEI
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 317
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 318 SALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
Score = 68.5 bits (160), Expect = 6e-12
Identities = 38/75 (50%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -2
Query: 831 GXLVXTPREREXVXTXRRSWVX-RFXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFR 655
G T ERE V + FEQEMA A+ SLEK YE PDGQVITIGNERFR
Sbjct: 197 GYSFTTTAEREIVRDIKEKLAYVALDFEQEMATAAASSSLEKSYELPDGQVITIGNERFR 256
Query: 654 CPRGSLPTLVLGYGS 610
CP LG S
Sbjct: 257 CPEAMFQPSFLGMES 271
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 213 bits (519), Expect = 2e-55
Identities = 96/118 (81%), Positives = 107/118 (90%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 471
PEA+FQP+FLGMEA GIHE YN IMKCDVDIRKDLY+N VLSGG+TM+PGIADRMQKEI
Sbjct: 32 PEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGIADRMQKEI 91
Query: 470 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 297
LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 92 AMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
Score = 51.2 bits (117), Expect = 1e-06
Identities = 23/38 (60%), Positives = 25/38 (65%)
Frame = -2
Query: 732 ASXXSLEKXYEFPDGQVITIGNERFRCPRGSLPTLVLG 619
A+ LEK YE PDGQVI+IGNERFRCP LG
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLG 42
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 80.2 bits (189), Expect = 2e-15
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 17/141 (12%)
Frame = -3
Query: 656 VAPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQ 480
+ PE F P F + + E N I C +D+R+ LY N VLSGG+TM+ R+Q
Sbjct: 204 LGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQ 263
Query: 479 KEIT----------------ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 348
++I + P ++ ++I+ ++Y+VW GGS+LAS F + +
Sbjct: 264 RDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHT 323
Query: 347 KQEYDESGPSIVHRKCF*THR 285
K +YDE GPSI F HR
Sbjct: 324 KADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 78.6 bits (185), Expect = 6e-15
Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 29/139 (20%)
Frame = -3
Query: 653 APEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 474
APEALFQP + +E G+ E +N+I D+D R + Y + VLSGG+TMYPG+ R+++E
Sbjct: 261 APEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERE 320
Query: 473 ITAL---------------------APST-----MKIKI-IAPP-ERKYSVWIGGSILAS 378
I L P T K KI I P RK+ V++GG++LA
Sbjct: 321 IKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLAD 380
Query: 377 -LSTFQQMWISKQEYDESG 324
+ W++++EY+E G
Sbjct: 381 IMKDKDSFWMTRKEYEEKG 399
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 762 FXFEQEMAPXASXXSLEKXYEFPDGQVITIGNERFRCP 649
+ EQE L + Y PDG+V+ + ERF P
Sbjct: 225 YNIEQEQKLALETTVLVEQYTLPDGRVVKLSGERFEAP 262
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 69.3 bits (162), Expect = 4e-12
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Frame = -3
Query: 656 VAPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 477
+ P + G A G+ + S+ D+DIR L+ + +++GG T+ G +R+ +
Sbjct: 134 IPPYMVASKGIEGSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNR 193
Query: 476 EITALAPSTMKIKII---APPERKYSVWIGGSILASL 375
E+ + P +M++K+I + E++++ WIGGSILASL
Sbjct: 194 ELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 3e-09
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = -3
Query: 653 APEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 519
A E LFQPS LG + GIHE+ + SI KCD+D+R +L+ N VLSG
Sbjct: 2302 AAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
Score = 35.1 bits (77), Expect = 0.072
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 756 FEQEMAPXASXXSLEKXYEFPDGQVITIGNERFRCPRGSLPTLVLG 619
+E+E+ + E Y PDGQ I IG+ERFR +LG
Sbjct: 2268 YERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLG 2313
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 52.4 bits (120), Expect = 4e-07
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = -3
Query: 584 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIA 429
+S++ C +D RK L N VL GGT M PG R+ +EI L S +K+
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQ 123
Query: 428 PP-ERKYSVWIGGSILASLSTFQQMWISKQEYDE 330
PP + W+GG+I SL +++ Y +
Sbjct: 124 PPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = -3
Query: 581 SIMKCDVDIRKDLYANTVLSGGTTMYPG 498
+I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.67
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 650 PEALFQPSFLGMEACGIHET 591
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 388 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRMS 561
+DPP+ +Y L+GG ++ + FCI G++V PP+ N+ + R++
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARIT 814
Query: 562 TS 567
S
Sbjct: 815 AS 816
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 415 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 296
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -1
Query: 373 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP 263
L C SR K P Y G RT ++C +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 536 NTVLSGGTTMYPGIADRMQKEITALAP 456
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 370 PSNKCGSRNKSTTSLAPPLYTGSASK--RTARRCLQQPAAGC 251
P N+ G++ + +L P++TGS + RT + P+A C
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920
>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
Length = 800
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 782 GEAGXVXXTSSRRWPPXHPXXPXRSXTNFPTVRSSPSETKDSVAPEALFQPSFL 621
GE G V +S PP P P + V S P++ + AP+ +P +L
Sbjct: 186 GENGPVRDSSQFLAPPIQPPPPTPPMDHTQKVDSPPAKLQVEPAPQEPQEPQYL 239
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,871,290
Number of Sequences: 59808
Number of extensions: 515424
Number of successful extensions: 1426
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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