Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F15
         (810 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CRJ5 Cluster: WD repeat protein; n=2; Cryptosporidium...    34   3.7  
UniRef50_UPI0000499083 Cluster: hypothetical protein 424.t00004;...    33   6.4  
UniRef50_Q6YVS9 Cluster: Splicing coactivator subunit-like prote...    33   8.5  

>UniRef50_Q5CRJ5 Cluster: WD repeat protein; n=2; Cryptosporidium|Rep:
            WD repeat protein - Cryptosporidium parvum Iowa II
          Length = 1117

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 112  NKFKGDCERFVSFFYEISSPXFGVNFKITKLNNKTKGTIVICA*QLLDIIE 264
            +K + +C RF+S  Y I     G N+K+  +   +KG I+I + QLLD+ E
Sbjct: 890  DKKQNNC-RFISLDYVIEPISMGENYKLIVIVGSSKGEILIFSFQLLDLGE 939


>UniRef50_UPI0000499083 Cluster: hypothetical protein 424.t00004;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 424.t00004 - Entamoeba histolytica HM-1:IMSS
          Length = 874

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 195 NLKIDSEVRGTYFVKKTNKTFTIALKLIFDMGIINSSKTSIHRNDRRRNVFQLIFHQSNN 16
           N K+  E + T   +  +   +I +K +   G+IN  K  +   D     F LIF + NN
Sbjct: 454 NEKLKKEYKATEVKEPVSLDISILIKNVEAFGVINDKKDRVFYGDVFEVQFNLIFDKENN 513

Query: 15  K 13
           K
Sbjct: 514 K 514


>UniRef50_Q6YVS9 Cluster: Splicing coactivator subunit-like protein;
           n=2; Oryza sativa (japonica cultivar-group)|Rep:
           Splicing coactivator subunit-like protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 122

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 661 KTGSWXKGPRYQAINSKKKRRAEIASKRYPVTERHLNNGSCSFQLKMHSGFRR 503
           +T  W +  R +    ++ RRAE A +R   TE    +G+ S   +   G RR
Sbjct: 64  ETERWTRSARMRRRGGRRSRRAEKAGRRSSATEEREGDGASSIPARRKGGERR 116


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,685,261
Number of Sequences: 1657284
Number of extensions: 12896137
Number of successful extensions: 26811
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26807
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69966202150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)