Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F14
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   28   7.8  
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)                 28   7.8  

>SB_56537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 346 LVPSFFIVLLYVCECIVILKGC 281
           L+ SF  + L +CECIV+ + C
Sbjct: 11  LMVSFLFIFLSLCECIVVDRAC 32


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 59   LNLSM*YTSTYETVKHYSIVEFD*FIVSSIAFDNKDISDNYLSKLSSN 202
            L + + +T T ET  HYS+      +  ++      +  NYL+K  SN
Sbjct: 943  LAMELVFTYTRETYTHYSMASIAILVGGAVLNATAFVGGNYLAKFLSN 990


>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
          Length = 745

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 59  LNLSM*YTSTYETVKHYSIVEFD*FIVSSIAFDNKDISDNYLSKLSSN 202
           L + + +T T ET  HYS+      +  ++      +  NYL+K  SN
Sbjct: 595 LAMELVFTYTRETYTHYSMASIAILVGGAVLNATAFVGGNYLAKFLSN 642


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,777
Number of Sequences: 59808
Number of extensions: 416162
Number of successful extensions: 1014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)