Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_F12
(825 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 36 0.043
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 33 0.17
At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to... 30 2.1
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 2.8
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 29 2.8
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 2.8
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 29 2.8
At2g04090.1 68415.m00392 MATE efflux family protein similar to r... 29 3.7
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 29 5.0
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 29 5.0
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 28 6.5
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 28 6.5
At2g04080.1 68415.m00391 MATE efflux family protein similar to h... 28 6.5
At2g04066.1 68415.m00389 MATE efflux protein-related similar to ... 28 6.5
At1g68430.1 68414.m07817 expressed protein 28 6.5
At5g24500.1 68418.m02887 expressed protein 28 8.7
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 28 8.7
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 35.5 bits (78), Expect = 0.043
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Frame = -3
Query: 649 RSPLTSPTRSK*RSPIRSPLKCQYQNLTKS----SRKSLTPSKRKCLMKSKCLLTSPTRS 482
RSP SP RS RS RSP++ ++L++S SR+SL+ S + KS + SP RS
Sbjct: 521 RSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKS--VSRSPVRS 578
Query: 481 TKE 473
+++
Sbjct: 579 SRK 581
Score = 35.1 bits (77), Expect = 0.057
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Frame = -3
Query: 670 SQCPTKL------RSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSK 509
S+ PT+L RSP+ SP +S RSP+RS K ++ +SSR+ ++ S + KS
Sbjct: 548 SRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKS- 606
Query: 508 CLLTSPTRSTK 476
+ SP R ++
Sbjct: 607 -VSRSPIRLSR 616
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/73 (32%), Positives = 38/73 (52%)
Frame = -3
Query: 694 SPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMK 515
SP++ P S + RSP+ RS RSP R + ++ +S RKS++ S + K
Sbjct: 522 SPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRK 581
Query: 514 SKCLLTSPTRSTK 476
S + SP RS++
Sbjct: 582 S--VSRSPVRSSR 592
Score = 32.3 bits (70), Expect = 0.40
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -3
Query: 694 SPTQCPYASQCPTKL-RSPLT-SPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCL 521
SP++ P S L R PL S RS RSP+RS + ++ + SR+SL+ S +
Sbjct: 496 SPSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTR-- 553
Query: 520 MKSKCLLTSPTRSTKE 473
+ + L SP RS ++
Sbjct: 554 LSRRSLSRSPIRSPRK 569
Score = 32.3 bits (70), Expect = 0.40
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = -3
Query: 697 ESPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 518
+S ++ P S + RSP+ S R RSP+RS K ++ + SR+S+ S+ +
Sbjct: 569 KSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSI--SRSPIRL 626
Query: 517 KSKCLLTSPTRSTKEV 470
+ + SP R + +
Sbjct: 627 SRRSISRSPVRGRRRI 642
Score = 31.9 bits (69), Expect = 0.53
Identities = 22/73 (30%), Positives = 39/73 (53%)
Frame = -3
Query: 694 SPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMK 515
S ++ P S + RSP+ S +S RSP+RS + ++ +SSRKS+ S+ +
Sbjct: 558 SLSRSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSV--SRSPIRLS 615
Query: 514 SKCLLTSPTRSTK 476
+ + SP R ++
Sbjct: 616 RRSISRSPIRLSR 628
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = -3
Query: 709 PVHVESPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKR 530
P+ +PTQ P S T++ +P + +S+ SP+++P Q + + TPS
Sbjct: 649 PMGAPTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSS 708
Query: 529 KCLMKSKCLLTSPTRSTKEVQVP 461
+ SP ++ VQ P
Sbjct: 709 ESYQAPN---LSPVQAPTPVQAP 728
>At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to
GB:P49333 from [Arabidopsis thaliana] (Science 262
(5133), 539-544 (1993))
Length = 738
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 529 KCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVKYHVPI 416
+ L +C L PTR+ E+Q+ +PV+Y VPI
Sbjct: 172 RTLALEECALWMPTRTGLELQLSYTLRHQHPVEYTVPI 209
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = -3
Query: 694 SPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 554
S ++ P S+ P + RSP S +RS+ S RSP++ + +++ + SR
Sbjct: 107 SYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 153
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = -3
Query: 694 SPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 554
S ++ P S+ P + RSP S +RS+ S RSP++ + +++ + SR
Sbjct: 118 SYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 164
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = -3
Query: 694 SPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSR 554
S ++ P S+ P + RSP S +RS+ S RSP++ + +++ + SR
Sbjct: 148 SYSRSPVRSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSR 194
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = -3
Query: 673 ASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTS 494
AS C + SP S S S SP + NLT +SL P + S +S
Sbjct: 90 ASPCSSYQPSPCASYNPSPGSSNFMSPASSSFANLTSGDGQSLIPWLKHLSTTSSSSASS 149
Query: 493 PTRSTKEVQVP 461
+R + +P
Sbjct: 150 SSRLPNYLYIP 160
>At2g04090.1 68415.m00392 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 483
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +3
Query: 528 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGLVNGD-LNFVGHWLAYGHWVGL--- 695
F+ DG LD R W G ++ + L+G G L F GH G W+G+
Sbjct: 384 FMVDGFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGHMNGKGLWIGVIVG 443
Query: 696 STWTGXXXARIXVGLS 743
ST G A + LS
Sbjct: 444 STAQGIILAIVTACLS 459
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -3
Query: 628 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTK 476
+RS+ RS SP++ + + + SS +S SKRK K K SP +S +
Sbjct: 833 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRR 883
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -3
Query: 628 TRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTK 476
+RS+ RS SP++ + + + SS +S SKRK K K SP +S +
Sbjct: 803 SRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSRR 853
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Frame = -3
Query: 709 PVHVESPTQCPYA------SQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKS 548
P V SP+ P A S P+ L SP TSP SP +P + + S+ S
Sbjct: 633 PSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAGHLGSPSDTPSSVVTPSASPSTSPS 692
Query: 547 LTPSKRKCLMKSKCLLTSPTRS 482
+PS S SP+ S
Sbjct: 693 ASPSVSPSAFPSASPSASPSAS 714
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = -3
Query: 694 SPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMK 515
SP++ S+ ++ RSP S +RS+ RS RSP + ++L +S KS + S R +
Sbjct: 201 SPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSP---KAKSLRRSPAKSTSRSPRS-RSR 256
Query: 514 SKCLLTSP 491
SK SP
Sbjct: 257 SKSRSLSP 264
>At2g04080.1 68415.m00391 MATE efflux family protein similar to
hypothetical protein GB:AAC27412; contains Pfam profile
PF01554: Uncharacterized membrane protein family
Length = 476
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 528 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLAYGHWVGL 695
F+ DG+ L+ R W G I ++ + LVG V L F W G W G+
Sbjct: 381 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGV 437
>At2g04066.1 68415.m00389 MATE efflux protein-related similar to
multidrug secondary transporter-like TRANSPARENT TESTA
12 protein (Swiss-Prot:Q9LYT3) [Arabidopsis thaliana];
supported by tandem duplication of (GI:4734008)
(TIGR_Ath1:At2g04070) [Arabidopsis thaliana]
Length = 171
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +3
Query: 528 FLFDGVRDFLDDFVRFWYWHFNGDRIGLLYFDLVGL-VNGDLNFVGHWLAYGHWVGL 695
F+ DG+ L+ R W G I ++ + LVG V L F W G W G+
Sbjct: 76 FILDGLTAVLNGVARGCGWQHIGALINVVAYYLVGAPVGVYLAFSREWNGKGLWCGV 132
>At1g68430.1 68414.m07817 expressed protein
Length = 146
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 688 TQCPYASQCPTKLRSPLTSP 629
TQC A+Q PT+ SP TSP
Sbjct: 12 TQCGVAAQSPTRSPSPRTSP 31
>At5g24500.1 68418.m02887 expressed protein
Length = 334
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/83 (26%), Positives = 34/83 (40%)
Frame = -3
Query: 697 ESPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 518
+SP P S P SP P + + S + + N + SS+ S P K+K
Sbjct: 59 DSPPSAPIPSD-PELAESPSEEPVPGEWYG-VMSDVLFELFNFSGSSKSSTIPGKKKLPR 116
Query: 517 KSKCLLTSPTRSTKEVQVPLVKE 449
K + ++V VPLV +
Sbjct: 117 KQSNPRHCSLETPEDVVVPLVNQ 139
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/79 (24%), Positives = 45/79 (56%)
Frame = -3
Query: 697 ESPTQCPYASQCPTKLRSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM 518
+SP+Q +Q P++ ++ SP++++ +S +S + Q Q+ ++S +S + S+ +
Sbjct: 755 QSPSQT--RAQSPSQAQA--QSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQS 810
Query: 517 KSKCLLTSPTRSTKEVQVP 461
S+ SP+++ + Q P
Sbjct: 811 PSQTQTQSPSQTQAQAQSP 829
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,287,942
Number of Sequences: 28952
Number of extensions: 221329
Number of successful extensions: 605
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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