Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F11
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62900.1 68414.m07102 O-methyltransferase, putative similar t...    29   5.1  
At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family pr...    28   8.9  

>At1g62900.1 68414.m07102 O-methyltransferase, putative similar to
           GB:AAB96879 from [Arabidopsis thaliana] (Biochim.
           Biophys. Acta 1353 (3), 199-202 (1997))
          Length = 205

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +1

Query: 499 QILGGHRTVAFMFNKTMIEV*SFLQKVLVKIYR 597
           +++G +   A MFN+TM E  + + K ++++Y+
Sbjct: 5   ELIGSNEQFAEMFNRTMSEASTLIMKKVLEVYK 37


>At1g59640.2 68414.m06708 basic helix-loop-helix (bHLH) family
           protein
          Length = 343

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -3

Query: 665 SFSHISRPVQPCCCGCSASRDVNLYIFTKT---FCKNDQTSIMVLLNMNATVR*PPSI*L 495
           SF H ++    C C CS   ++   IF++    FC+  +  + +  + +        + L
Sbjct: 259 SFKHCNKRSDLCFCSCSPKTELKTTIFSQNMTCFCRYSRVGVAISSSKHCN----EPVTL 314

Query: 494 IYYTYVL 474
            +Y+Y L
Sbjct: 315 CFYSYCL 321


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,334
Number of Sequences: 28952
Number of extensions: 293968
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)