Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_F09
(811 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 132 2e-31
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 132 2e-31
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 132 2e-31
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 116 3e-26
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 116 3e-26
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 73 4e-18
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 81 1e-15
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_2674| Best HMM Match : Tubulin (HMM E-Value=0) 54 2e-07
SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24) 53 2e-07
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0) 52 4e-07
SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0) 52 4e-07
SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0) 52 4e-07
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0) 52 4e-07
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0) 52 6e-07
SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 6e-07
SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0) 52 7e-07
SB_5512| Best HMM Match : Tubulin (HMM E-Value=0) 52 7e-07
SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32) 38 0.007
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 31 1.1
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 29 4.5
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092) 28 7.8
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 132 bits (320), Expect = 2e-31
Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Frame = -1
Query: 793 SIQXK-TAVFXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRR 617
++Q K ++ F IP VKTA CDIPP+ + G + KRISEQF+AMFRR
Sbjct: 332 NVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR 391
Query: 616 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTEF 482
KAFLHWYTGEGMDEMEF EAESN+NDLVSEY QYQ+ATAE++ EF
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEF 436
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 132 bits (320), Expect = 2e-31
Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Frame = -1
Query: 793 SIQXK-TAVFXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRR 617
++Q K ++ F IP VKTA CDIPP+ + G + KRISEQF+AMFRR
Sbjct: 277 NVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR 336
Query: 616 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTEF 482
KAFLHWYTGEGMDEMEF EAESN+NDLVSEY QYQ+ATAE++ EF
Sbjct: 337 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEF 381
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 132 bits (320), Expect = 2e-31
Identities = 65/105 (61%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Frame = -1
Query: 793 SIQXK-TAVFXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRR 617
++Q K ++ F IP VKTA CDIPP+ + G + KRISEQF+AMFRR
Sbjct: 332 NVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR 391
Query: 616 KAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTEF 482
KAFLHWYTGEGMDEMEF EAESN+NDLVSEY QYQ+ATAE++ EF
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEF 436
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 116 bits (278), Expect = 3e-26
Identities = 55/95 (57%), Positives = 65/95 (68%)
Frame = -1
Query: 769 FXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTG 590
F IP VKT CDI PK + G + KR+ EQF+AMFRRKAFLHWYTG
Sbjct: 106 FVEWIPNNVKTTVCDIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTG 165
Query: 589 EGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTE 485
EGMDEMEF EAESN++DL++EY QYQEA A+ + E
Sbjct: 166 EGMDEMEFTEAESNMHDLIAEYQQYQEAEADIEGE 200
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 116 bits (278), Expect = 3e-26
Identities = 55/95 (57%), Positives = 65/95 (68%)
Frame = -1
Query: 769 FXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTG 590
F IP VKT CDI PK + G + KR+ EQF+AMFRRKAFLHWYTG
Sbjct: 168 FVEWIPNNVKTTVCDIAPKGLKMAATFVGNNTAIQELFKRVGEQFTAMFRRKAFLHWYTG 227
Query: 589 EGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTE 485
EGMDEMEF EAESN++DL++EY QYQEA A+ + E
Sbjct: 228 EGMDEMEFTEAESNMHDLIAEYQQYQEAEADIEGE 262
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 72.5 bits (170), Expect(2) = 4e-18
Identities = 34/74 (45%), Positives = 44/74 (59%)
Frame = -1
Query: 769 FXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTG 590
F IP +KTA CD+PP + + +R +EQF+AMFRR+AFLHWYT
Sbjct: 160 FVEWIPNNMKTAVCDVPPVGLKNAATFLYNSTAIQEAFRRFTEQFAAMFRRRAFLHWYTT 219
Query: 589 EGMDEMEFNEAESN 548
EGMD +EF E + N
Sbjct: 220 EGMDPLEFTEIKRN 233
Score = 37.1 bits (82), Expect(2) = 4e-18
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = -1
Query: 559 AESNVNDLVSEY*QYQEATAEDD 491
A+SN+NDL+SEY QY++A ++DD
Sbjct: 259 ADSNLNDLISEYQQYEDAKSDDD 281
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 81.0 bits (191), Expect = 1e-15
Identities = 38/95 (40%), Positives = 55/95 (57%)
Frame = -1
Query: 778 TAVFXRGIPXXVKTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHW 599
+++F IP K A CD+PP + + + KRI + MFRR+AFLHW
Sbjct: 243 SSLFVDWIPNNGKVAVCDVPPHDMKMSASCISSNTAIQELFKRIRLHYKLMFRRRAFLHW 302
Query: 598 YTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAED 494
YT EGMD +F EA++++ DL+S Y Q ++ AED
Sbjct: 303 YTEEGMDSQQFEEADNDILDLISTYQQCEDMKAED 337
>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 56.4 bits (130), Expect = 3e-08
Identities = 28/77 (36%), Positives = 44/77 (57%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 786 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 844
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E+D E
Sbjct: 845 EKDYEEVAVESVEEDEE 861
Score = 52.0 bits (119), Expect = 6e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 355 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 413
Query: 535 VSEY 524
+Y
Sbjct: 414 EKDY 417
>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 1036
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 955 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 1013
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E++ E
Sbjct: 1014 EKDYEEVGVDSVEEEGE 1030
>SB_47795| Best HMM Match : Tubulin_C (HMM E-Value=0.24)
Length = 149
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = -1
Query: 652 RISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTE 485
R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y + + ++D E
Sbjct: 88 RLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVDNDGE 143
>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 370 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E+ E
Sbjct: 429 EKDYEEVGVDSVEEGEE 445
>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/76 (36%), Positives = 44/76 (57%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 522 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 580
Query: 535 VSEY*QYQEATAEDDT 488
+Y + A + DD+
Sbjct: 581 EKDY-EEVGADSPDDS 595
>SB_37573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 307 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 365
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E + E
Sbjct: 366 EKDYEEVGVDSVEGEGE 382
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 1150 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 1208
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E + E
Sbjct: 1209 EKDYEEVGVDSVEGEGE 1225
Score = 52.0 bits (119), Expect = 6e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 741 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 799
Query: 535 VSEY 524
+Y
Sbjct: 800 EKDY 803
>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 885
Score = 52.4 bits (120), Expect = 4e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 370 KVQRAVCMLSNTTAVAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 535 VSEY 524
+Y
Sbjct: 429 EKDY 432
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 803 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 861
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E + E
Sbjct: 862 EKDYEEVGVDSVEGEGE 878
>SB_51156| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 377
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 295 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 353
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E + E
Sbjct: 354 EKDYEEVGVDSVEGEGE 370
>SB_23895| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 250
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 168 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 226
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E + E
Sbjct: 227 EKDYEEVGVDSVEGEGE 243
>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 451
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/77 (35%), Positives = 43/77 (55%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 370 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 535 VSEY*QYQEATAEDDTE 485
+Y + + E + E
Sbjct: 429 EKDYEEVGVDSVEGEGE 445
>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 536
Score = 52.0 bits (119), Expect = 6e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 354 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 412
Query: 535 VSEY 524
+Y
Sbjct: 413 EKDY 416
>SB_22190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 52.0 bits (119), Expect = 6e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = -1
Query: 715 KV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDL 536
KV R LS T + + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L
Sbjct: 335 KVQRAVCMLSNTTAIAEAWA-RLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 393
Query: 535 VSEY 524
+Y
Sbjct: 394 EKDY 397
>SB_51150| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 232
Score = 51.6 bits (118), Expect = 7e-07
Identities = 19/43 (44%), Positives = 31/43 (72%)
Frame = -1
Query: 652 RISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEY 524
R++ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y
Sbjct: 188 RLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 230
>SB_5512| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 365
Score = 51.6 bits (118), Expect = 7e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = -1
Query: 676 QPSRNYXKRISEQFSAMFRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEY 524
+P R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y
Sbjct: 295 KPIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 345
>SB_57880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = -1
Query: 625 FRRKAFLHWYTGEGMDEMEFNEAESNVNDLVSEY*QYQEATAEDDTE 485
+ ++AF+HWY GEGM+E EF+EA ++ L +Y + + E + E
Sbjct: 13 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGEGE 59
>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
Length = 488
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -1
Query: 742 KTARCDIPPKV*RCRLRLSGTRQPSRNYXKRISEQFSAMFRRKAFLHWYTG-EGMDEMEF 566
KT C +PP L +N + ++F +++RKA +H YT +G++ +F
Sbjct: 397 KTGLCSVPPVGQPYSLLTLANNSCIKNTFVELKDRFMKLYKRKAHVHHYTHVDGLEVGQF 456
Query: 565 NEAESNVNDLVSEY 524
++ +++ L+ EY
Sbjct: 457 DDGLESLSWLIQEY 470
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 418 GSEVRSSHGARPAPTPPGLLGRTRCRLPRWPPGTVSTQTP 537
G+E S+ GA + TP L RT P PG S+ TP
Sbjct: 988 GAESSSTPGAASSSTPGAALSRTPGAAPSSTPGAASSTTP 1027
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 672 HPGTIXREYPSSSLPCSDVKLSCTGTPARAWTRWSSTKQRATSTIWCLST 523
HPGT+ S SLP S + S + P+RA + S T S C T
Sbjct: 74 HPGTLATFASSPSLPVSPLVSSHSAIPSRAKSPLSLTISDGDSASTCSET 123
>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
Length = 1146
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 436 SHGARPAPTPPGLLGRTRCRLPRWPPGTVSTQTPDR 543
SHGARPA + G RC + + PGT+ T + R
Sbjct: 918 SHGARPAMSQSQREGNDRCVV--YQPGTIETISDGR 951
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,643,016
Number of Sequences: 59808
Number of extensions: 397709
Number of successful extensions: 1126
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -