Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F08
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 31   1.4  
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                31   1.4  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  30   2.5  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   30   2.5  
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)                   29   3.3  
SB_44033| Best HMM Match : SRCR (HMM E-Value=1.3)                      29   4.3  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            29   5.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
 Frame = -2

Query: 678  VHKPVPYEVKSPLT----SPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSK 511
            +H     E+++PL     SP +   RS +       YQ LT ++     PS+ + +  + 
Sbjct: 2018 IHVDAKPELRTPLVTADISPEQPSPRSELEKRAISDYQPLTINASYHRRPSEPRIVSPAG 2077

Query: 510  CLLTSPTRSTKEVQVPLVKEVPYPVKYHVPI 418
              L SPT     V   +    P  V +H P+
Sbjct: 2078 SSLASPTSIATSVITGVTGLHPVTVSHHQPL 2108


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/97 (23%), Positives = 37/97 (38%)
 Frame = -2

Query: 711 PRPC*KPYPVTVHKPVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKR 532
           P P  +P P     P    ++ P+ + TR     P+  P+    +  T    +   P+  
Sbjct: 413 PLPLERPVPAVTRLPTHLPLERPVPAVTRLPTHLPLEQPVPAVTRLPTHLPLERPVPAV- 471

Query: 531 KCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVKYHVP 421
            CL  +   L  P  +   +  PL  E P P   H+P
Sbjct: 472 TCL-PTHLPLERPVPAVTRLPTPLPLERPVPAVTHLP 507


>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = -2

Query: 720 LXXPRPC*KPYPVTVHKPV----PYEVKSPLTSPTRSK*RSPIRSPLKCQYQN-LTKSS- 559
           L  P P   P P+T   P+    P    SPLTS +     SP+ SP      + LT SS 
Sbjct: 185 LTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLTSSSPLTSPSPLTSSSPLTSSSP 244

Query: 558 RKSLTPSKRKCLMKSKCLLTSPTRST 481
             S +P      + S   LTSP+  T
Sbjct: 245 LTSSSPLTSSSPLTSPSPLTSPSPLT 270



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -2

Query: 690 YPVTVHKPVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQN-LTKSS-RKSLTPSKRKCLMK 517
           + ++ + P P    SPLTS +     SP+ SP      + LT SS   S +P      + 
Sbjct: 163 FSISAYFPSPLTSSSPLTSSSPLTSPSPLTSPSPLTSSSPLTSSSPLTSSSPLTSSSPLT 222

Query: 516 SKCLLTSPTRSTKEVQVPLVKEVP 445
           S   LTSP+  T     PL    P
Sbjct: 223 SSSPLTSPSPLTS--SSPLTSSSP 244


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/60 (31%), Positives = 33/60 (55%)
 Frame = -2

Query: 654 VKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKE 475
           ++S   SP R + RS  R P   + Q+  +  R++ + S+R+C  KS  + +SP +S  E
Sbjct: 331 LRSRSRSPYRIRYRSRSRPPRGRRSQSPRR--RRTRSRSRRRCRSKSSSIASSPDKSKDE 388


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 636 SPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRS 484
           SP R K RSP RSP K +  + +     S +P ++    K+   L+ P RS
Sbjct: 195 SPFRHKSRSPFRSPQKERIPHQSPERLPSWSPVRQSPFNKTHRRLSPPRRS 245


>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
          Length = 351

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
 Frame = -2

Query: 651 KSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLM--KSKCLLTSPTRSTK 478
           K P T  T++K RS  R  LKC    L  +  K +   KRK     K K LL + + S +
Sbjct: 65  KEPETDGTQNK-RSRKRKLLKCDQLLLPDTRLKPIGSKKRKVKQSSKKKTLLVNDSSSDE 123

Query: 477 E--VQVPLVKE 451
           +     PLVKE
Sbjct: 124 DEPPPKPLVKE 134


>SB_44033| Best HMM Match : SRCR (HMM E-Value=1.3)
          Length = 112

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 750 TSRQPYX-DXXLXXPRPC*KPYPVTVHKPVPYEVKSPLTSPTR 625
           T+R+P+        P    +P+P T  +P+PY  + P    TR
Sbjct: 8   TTRRPFPYTTRRPFPYTTRRPFPYTTRRPLPYTTRRPFPYTTR 50


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = -2

Query: 738  PYXDXXLXXPRPC*KPYPVTVHKPVPYEVKSPLTSPTRSK*RSPIRSP 595
            PY    +  P P   P P    K VP     P  +P  S+   P  SP
Sbjct: 1907 PYRTRHIRSPSPSRDPVPTRFTKSVPVRTSFPTWNPVPSRTADPKISP 1954


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
 Frame = -2

Query: 693  PYPVTVHKPVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLT--PSKRKC-- 526
            P+P     P P   +  ++SP  ++ R P   P K +      + R++ T  P +R+   
Sbjct: 1486 PFPAERRTPAPDPGERQISSPFPAERRIPPLDPAKRRVSPPFPAERRTPTPDPGERRVSP 1545

Query: 525  LMKSKCLLTSPTRSTKEVQVPLVKE--VPYPV 436
            L   +C +  P  + + V  P   E   P PV
Sbjct: 1546 LFPDECQMPPPDPAERRVSPPFPAERRTPTPV 1577


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 651  KSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRK--SLTPSKRKCLMK 517
            KSP  SP R + RSP  SP   +   L    RK  S  PS R+   K
Sbjct: 924  KSPSPSPPRRRRRSPSNSPPPMRSSPLPPPQRKRASTPPSPRRARRK 970


>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 243 FVVVFCVLIGCCEHYL 196
           F++V+C+++GCC  YL
Sbjct: 3   FMLVWCIVVGCCMAYL 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,314,851
Number of Sequences: 59808
Number of extensions: 325797
Number of successful extensions: 1003
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)