Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F08
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    35   0.072
At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to...    30   2.0  
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa...    30   2.0  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    29   3.6  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    29   3.6  
At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identica...    28   6.2  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   8.2  

>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = -2

Query: 651 KSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKE 475
           +SP     RS  RSPIRSP K   ++  +SSRKS+  S+       + +  SP RS+++
Sbjct: 549 RSPTRLSRRSLSRSPIRSPRKSVSRSPVRSSRKSV--SRSPVRSSRRRISRSPVRSSRK 605



 Score = 34.3 bits (75), Expect = 0.095
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
 Frame = -2

Query: 651 KSPLTSPTRSK*RSPIRSPLKCQYQNLTKS----SRKSLTPSKRKCLMKSKCLLTSPTRS 484
           +SP  SP RS  RS  RSP++   ++L++S    SR+SL+ S  +   KS  +  SP RS
Sbjct: 521 RSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIRSPRKS--VSRSPVRS 578

Query: 483 TKE 475
           +++
Sbjct: 579 SRK 581



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 20/58 (34%), Positives = 34/58 (58%)
 Frame = -2

Query: 651 KSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTK 478
           +SP+ SP +S  RSP+RS  K   ++  +SSR+ ++ S  +   KS  +  SP R ++
Sbjct: 561 RSPIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKS--VSRSPIRLSR 616



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -2

Query: 651 KSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKEV 472
           +SP+ S  R   RSP+RS  K   ++  + SR+S+  S+    +  + +  SP R  + +
Sbjct: 585 RSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRRSI--SRSPIRLSRRSISRSPVRGRRRI 642



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -2

Query: 651 KSPLT-SPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPTRSTKE 475
           + PL  S  RS  RSP+RS  +   ++  + SR+SL+ S  +  +  + L  SP RS ++
Sbjct: 512 RGPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTR--LSRRSLSRSPIRSPRK 569


>At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to
           GB:P49333 from [Arabidopsis thaliana] (Science 262
           (5133), 539-544 (1993))
          Length = 738

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 531 KCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVKYHVPI 418
           + L   +C L  PTR+  E+Q+       +PV+Y VPI
Sbjct: 172 RTLALEECALWMPTRTGLELQLSYTLRHQHPVEYTVPI 209


>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
           family protein similar to arabinogalactan protein
           [Daucus carota] GI:11322245; contains Pfam profile
           PF01190: Pollen proteins Ole e I family
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = -2

Query: 705 PC*KPYPVTVHKPVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLT--PSKR 532
           P   P    V  P    VK P+  PT++  + P + P+K      TK+  K  T  P K 
Sbjct: 103 PTKPPVKPPVSPPAKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKP 162

Query: 531 KCLMKSKCLLTSPTRSTKEVQVPLVKEVPYPVKYHVPIY 415
                +K  +  PT+    V+ P+      PVK   P+Y
Sbjct: 163 PVYPPTKAPVKPPTK--PPVKPPVSPPAKPPVK--PPVY 197


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
            Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
            [Bos taurus]
          Length = 884

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -2

Query: 669  PVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPT 490
            P   E        +RS+ RS   SP++ + +  + SS +S   SKRK   K K    SP 
Sbjct: 820  PTSNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPG 879

Query: 489  RSTK 478
            +S +
Sbjct: 880  KSRR 883


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = -2

Query: 669 PVPYEVKSPLTSPTRSK*RSPIRSPLKCQYQNLTKSSRKSLTPSKRKCLMKSKCLLTSPT 490
           P   E        +RS+ RS   SP++ + +  + SS +S   SKRK   K K    SP 
Sbjct: 790 PTSNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPG 849

Query: 489 RSTK 478
           +S +
Sbjct: 850 KSRR 853


>At2g22470.1 68415.m02664 arabinogalactan-protein (AGP2) identical
           to gi|3883122|gb|AAC77824; supported by cDNA
           gi|3883121|gb|AF082299
          Length = 131

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 711 PRPC*KPYPVTVHKPVPYEVKSPLTSPTRSK*RSPIRSP 595
           P P   P PV V++P P    SP TSP  S  ++   +P
Sbjct: 46  PSPIASP-PVPVNEPTPAPTTSPTTSPVASPPQTDAPAP 83


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 711 PRPC*KPYPVT--VHKPVPYEVKSPLTSPTRSK*RSPIRSP 595
           P P  KP  V    +KP    VK P TSP +     P++SP
Sbjct: 110 PTPTVKPPSVQPPTYKPPTPTVKPPTTSPVKPPTTPPVQSP 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,680
Number of Sequences: 28952
Number of extensions: 224101
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)