Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F07
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)                32   0.41 
SB_15668| Best HMM Match : Chorion_3 (HMM E-Value=2.5)                 32   0.41 
SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)                  29   5.1  
SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_20903| Best HMM Match : Extensin_2 (HMM E-Value=0.3)
          Length = 713

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 507 SIELXSSNWXVRXGKLMSGKXPTGXSFPTTXES 605
           S+E     W  R G++M+G+ PT  S P   ES
Sbjct: 128 SVETHDREWITRLGQVMNGETPTDLSLPELEES 160


>SB_15668| Best HMM Match : Chorion_3 (HMM E-Value=2.5)
          Length = 276

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 507 SIELXSSNWXVRXGKLMSGKXPTGXSFPTTXES 605
           S+E     W  R G++M+G+ PT  S P   ES
Sbjct: 62  SVETHDREWITRLGQVMNGETPTDLSLPELEES 94


>SB_48947| Best HMM Match : NADH5_C (HMM E-Value=0.49)
          Length = 358

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 257 ISGNLLHFFFVKLKKSNSVSPSATANLNVAINSKL---FYFLPLXLKAAAWFCPLALLKS 87
           ++G++  FF + ++ +  ++   T+      N+ L   FY  P+  +   W+   A L S
Sbjct: 238 VNGSIPLFFELGVESTYPIAEGITSGCLTFSNNFLQVIFYIFPMVPRFGTWWINWAALIS 297

Query: 86  MGXR*PLTIRW 54
            G   PL + W
Sbjct: 298 CGTSIPLLVVW 308


>SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 129 KGSGLVLPPGIAEVHGRXVTTHHQVGRMLVC 37
           KG+G V P G+ E+ GR +      G + VC
Sbjct: 285 KGNGEVRPIGVGEIIGRIIDITEASGALQVC 315


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,047,052
Number of Sequences: 59808
Number of extensions: 338077
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)