Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_F07
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    28   5.5  
At5g53610.1 68418.m06660 glycosyl hydrolase family protein 17 si...    27   9.6  

>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 587 PNXIXIPPXPNLETXXXPXPXLP 655
           PN   +PP PNL     P P LP
Sbjct: 199 PNLPIVPPLPNLPVPKLPVPDLP 221


>At5g53610.1 68418.m06660 glycosyl hydrolase family protein 17
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 110

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 68  VVTXRPWTSAMPGGRTKPLPLXVMAKNKKVYC 163
           VVT  PW SAMP    + L   +     +V C
Sbjct: 22  VVTCEPWCSAMPSSTPEQLQANIQLACSRVDC 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,319,410
Number of Sequences: 28952
Number of extensions: 238341
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)