Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_E16
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C...    30   1.6  
At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B...    29   4.9  

>At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; similar to protein phosphatase-2C (PP2C)
           (GI:3643085) [Mesembryanthemum crystallinum]
          Length = 380

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +2

Query: 392 LCVKKIIKSNFLATCGEYKFINRDSLDI 475
           LCVKK IKS FL    +Y+F +  SLDI
Sbjct: 155 LCVKKAIKSAFLK--ADYEFADDSSLDI 180


>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
           domain-containing protein low similarity to Rev1S [Homo
           sapiens] GI:12483635; contains Pfam profiles PF00817:
           ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
           domain
          Length = 1102

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +2

Query: 374 LTGLMKLCVKKIIKSNFLATCGEYKFINRDSL 469
           L G+  +  +K++K N + TCG+ + I++DSL
Sbjct: 549 LPGVGSVLKEKLVKQN-IQTCGQLRLISKDSL 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,538
Number of Sequences: 28952
Number of extensions: 249204
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)