Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C23
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                     196   2e-50
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      57   2e-08
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)                57   2e-08
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                55   8e-08
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   2e-05
SB_49873| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.006
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)                   35   0.092
SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)              35   0.092
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)                  31   1.1  
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      31   1.5  
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                30   2.6  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)                29   4.6  
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              29   4.6  
SB_14337| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)                  28   8.0  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score =  196 bits (478), Expect = 2e-50
 Identities = 89/127 (70%), Positives = 103/127 (81%)
 Frame = -3

Query: 777  WEXAIXRXRPDTXXSRWILXRHT*NXPLTTPYSPPSIRFLTKVWHPNVYENGDLCISILH 598
            W+ AI    P T  +      H  + P   PYSPP+ RFLTK+WHPN+YE+GD+CISILH
Sbjct: 1157 WDVAIFGP-PGTLYAGGYFKAHM-SFPHDYPYSPPTFRFLTKMWHPNIYESGDVCISILH 1214

Query: 597  PPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYRRWRDSKGKD 418
            PPVDDPQSGELP ERWNPTQ+VRT+LLSVISLLNEPNTFSPANVDASVM+R+WR++KGKD
Sbjct: 1215 PPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRETKGKD 1274

Query: 417  KEYENII 397
             EYE II
Sbjct: 1275 SEYEKII 1281


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score =  103 bits (246), Expect = 2e-22
 Identities = 44/82 (53%), Positives = 59/82 (71%)
 Frame = -3

Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
           P   P  PP++ F++ +WHPNV++NG++CISILH P +D    E   ERW P  +V T++
Sbjct: 389 PKEYPQRPPTLTFISDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHTVETIM 448

Query: 519 LSVISLLNEPNTFSPANVDASV 454
           LSVIS+L EPN  SPANVDA+V
Sbjct: 449 LSVISMLAEPNDESPANVDAAV 470


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 30/106 (28%), Positives = 50/106 (47%)
 Frame = -3

Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
           P   P+ PP I F TK++HPN+ E G +C+ I+ P            E W P      V+
Sbjct: 49  PAEYPFKPPKITFKTKIYHPNIDEKGQVCLPIISP------------ENWKPATKTEQVI 96

Query: 519 LSVISLLNEPNTFSPANVDASVMYRRWRDSKGKDKEYENIIRKQAQ 382
            ++++L+++P    P   D +  Y   +D K   K  E+  +K  +
Sbjct: 97  QALLALVHDPEPEHPLRADLAEEYS--KDKKKFMKNAEDCTKKYGE 140


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/79 (31%), Positives = 43/79 (54%)
 Frame = -3

Query: 693 TTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLS 514
           +TP+ PP +RF+T ++HPN+  +G +C+  L  P         P   W P  ++ +VL +
Sbjct: 38  STPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------PKGMWKPALNISSVLST 88

Query: 513 VISLLNEPNTFSPANVDAS 457
           ++ L+ EPN   P   + S
Sbjct: 89  ILILMAEPNPDDPLMAEIS 107


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 25/81 (30%), Positives = 42/81 (51%)
 Frame = -3

Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
           P   P+ PP +RF+T ++HPN+  +G +C+  L  P         P   W P  ++ +VL
Sbjct: 22  PERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------PKGMWKPALNISSVL 72

Query: 519 LSVISLLNEPNTFSPANVDAS 457
            +++ L+ EPN   P   + S
Sbjct: 73  STILILMAEPNPDDPLMAEIS 93


>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = -3

Query: 663 FLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSVISLLNEPNT 484
           FLTK++HPNV +NG++C++ L              + W P   ++ VLL+V  LL  PN 
Sbjct: 147 FLTKIFHPNVAKNGEICVNTLK-------------KDWKPDLGIKQVLLTVKCLLIVPNP 193

Query: 483 FSPANVDA-SVMYRRWRDSKGKDKEYENIIRK 391
            S  N +A  ++  R+ D   + K +  I  K
Sbjct: 194 ESALNEEAGKLLLERYDDYSKRAKMFTEIHAK 225


>SB_49873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 14/29 (48%), Positives = 24/29 (82%)
 Frame = -3

Query: 393 KQAQVARMEAEKEGIVVPLTLEDYCIKTQ 307
           KQ Q ++++AEK+GI VP T+++YC+K +
Sbjct: 2   KQVQRSKIDAEKDGIHVPTTVQEYCVKAK 30


>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
          Length = 48

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -3

Query: 555 RWNPTQSVRTVLLSVISLLNEPNTFSPANVDASVMYR 445
           +W+P   +RTVLLS+ +LL+ PN   P   D +  ++
Sbjct: 2   KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 38


>SB_24498| Best HMM Match : Galactosyl_T_2 (HMM E-Value=0)
          Length = 446

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -3

Query: 570 ELPCERWNPTQSVRTVLLSVISLL 499
           E   ERW+P QSV  +LLSVIS+L
Sbjct: 4   ESSAERWSPVQSVEKILLSVISML 27


>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
          Length = 215

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -3

Query: 687 PYSPPSIRFLTKVWHPNV-YENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVLLSV 511
           P +PP  R +  ++HPN+  ++G +C+S+L    DD          WN +  +  ++  +
Sbjct: 65  PNTPPVPRCVNNIYHPNMDLDDGSVCLSLL----DD----------WNESNDLEDLVQGL 110

Query: 510 ISLLNEPNTFSP 475
           + L   PN   P
Sbjct: 111 LFLFYNPNLEDP 122


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = -3

Query: 639 NVYENGDLCISILHPPVD---DPQSG----ELPCERWNPTQSVRTVLLSVISLLNEPNTF 481
           +VYE G   + I H P D    P  G    ++  + W+P  ++  VLLS+ SLL + N  
Sbjct: 137 SVYEGGVFFLDI-HFPSDYPFKPPKGMVCLDILKDSWSPALTISKVLLSICSLLTDCNPA 195

Query: 480 SPANVDASVMY 448
            P     + +Y
Sbjct: 196 DPLVGSIAALY 206


>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -3

Query: 699 PLTTPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRTVL 520
           P   P  PPSI  LT      + +   L +S  HP            E W P+ S+RTVL
Sbjct: 65  PPEYPMKPPSIMLLTPNGRFEIGKKICLSMSAHHP------------ETWQPSWSIRTVL 112

Query: 519 LSVISLL 499
           +++I  +
Sbjct: 113 MAIIGFM 119


>SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 687 PYSPPSIRFLTKVWHPNVYENG 622
           P S P ++F + V+HP ++ENG
Sbjct: 119 PDSRPLVKFTSNVFHPQIHENG 140


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 699 PLTTPYSPPSIRFLTKV---WHPNVYENGDLCIS 607
           P   P +PPS  +L+      +PN+YE+G +CI+
Sbjct: 660 PANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCIT 693


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 559 RTLEPYTIGSHRTPLCNLTPQRAEHLQSGER 467
           RT  P  I SH  P C+L+P    H+ S  R
Sbjct: 441 RTTPPQLIPSHHPPYCSLSPLNNLHIYSATR 471


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -3

Query: 699 PLTTPYSPPSIRFLTKV-----WHPNVYENGDLCISIL 601
           P   P  PP ++ +T       ++PN+Y NG +C+SI+
Sbjct: 37  PPDYPIRPPRVKLMTTGSGQVRFNPNLYRNGKVCLSII 74


>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
          Length = 243

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISIL 601
           P   PSI   TK++HPN+     +C+S+L
Sbjct: 65  PNVAPSINCKTKIYHPNMDGYDGVCMSLL 93


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = -3

Query: 687 PYSPPSIRFLTKVWHPNVYENGDLCISILHP--PVDDPQSGELPCERWNPTQSVRTV 523
           PY PPSI    +  HP         +S      P D  Q  +    R  PTQ+VRT+
Sbjct: 532 PYRPPSIDSAYRTDHPTQTVRSVQTLSSTDSAYPTDSTQHRQCAPYRLYPTQTVRTI 588


>SB_14337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = -3

Query: 696 LTTPYSPPSI-----RFLTKVWHP-NVYE-NGDLCISILHPPVDDPQSGELPCERWNP 544
           L   ++PPS+       L K W+P ++++  G +     +PP  D   G +  ++WNP
Sbjct: 172 LAQQWNPPSLDDIGGSILAKQWNPPSLHDIGGSILAQQWNPPSLDDNGGSILAKQWNP 229


>SB_56678| Best HMM Match : WD40 (HMM E-Value=6.4e-22)
          Length = 834

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 129 DQTC-TDLYTLCSTSLINVLSYINIRRKKKHEITDNIE 19
           D  C +D   L +TS    LS  N+RR K  + +DN+E
Sbjct: 179 DMECDSDCKLLLATSGDGSLSVFNVRRHKHEDSSDNVE 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,698
Number of Sequences: 59808
Number of extensions: 366740
Number of successful extensions: 903
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)