Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C19
(774 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 309 2e-84
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 309 2e-84
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 309 2e-84
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 308 3e-84
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 308 3e-84
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 297 7e-81
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 209 2e-54
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 109 2e-24
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 107 6e-24
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 107 6e-24
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 107 6e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 107 8e-24
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 107 8e-24
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 106 2e-23
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 105 2e-23
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 105 4e-23
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 51 7e-07
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 48 5e-06
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.28
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 32 0.49
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.5
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 2.6
At5g45330.1 68418.m05564 expressed protein ; expression supporte... 29 4.5
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 29 4.5
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 6.0
At1g68080.1 68414.m07777 expressed protein 28 6.0
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 28 6.0
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 7.9
At3g26855.1 68416.m03360 hypothetical protein 28 7.9
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 28 7.9
At1g51355.1 68414.m05776 expressed protein 28 7.9
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 309 bits (758), Expect = 2e-84
Identities = 135/156 (86%), Positives = 148/156 (94%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQ
Sbjct: 283 HEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKR
Sbjct: 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
AF HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGALNVDVTEFQTNLVPYP 263
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVISAEKA+
Sbjct: 263 PRIHFMLSSYAPVISAEKAF 282
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 309 bits (758), Expect = 2e-84
Identities = 135/156 (86%), Positives = 148/156 (94%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQ
Sbjct: 283 HEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKR
Sbjct: 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
AF HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGALNVDVTEFQTNLVPYP 263
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVISAEKA+
Sbjct: 263 PRIHFMLSSYAPVISAEKAF 282
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 309 bits (758), Expect = 2e-84
Identities = 135/156 (86%), Positives = 148/156 (94%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQ
Sbjct: 283 HEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKR
Sbjct: 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
AF HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGALNVDVTEFQTNLVPYP 263
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVISAEKA+
Sbjct: 263 PRIHFMLSSYAPVISAEKAF 282
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 308 bits (756), Expect = 3e-84
Identities = 135/156 (86%), Positives = 146/156 (93%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRT+Q
Sbjct: 283 HEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKR
Sbjct: 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
AF HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGAINVDITEFQTNLVPYP 263
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVISA KAY
Sbjct: 263 PRIHFMLSSYAPVISAAKAY 282
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 308 bits (756), Expect = 3e-84
Identities = 135/156 (86%), Positives = 146/156 (93%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQLSV EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRT+Q
Sbjct: 283 HEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKR
Sbjct: 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 136
AF HWYVGEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGAINVDITEFQTNLVPYP 263
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVISA KAY
Sbjct: 263 PRIHFMLSSYAPVISAAKAY 282
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 297 bits (728), Expect = 7e-81
Identities = 129/154 (83%), Positives = 141/154 (91%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQ SV EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN A+A IK KRTIQ
Sbjct: 283 HEQFSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FVDWCPTGFK GINYQPP+VVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMY+KR
Sbjct: 343 FVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKR 402
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 142
AF HWYVGEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 403 AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGAINVDITEFQTNLVPYP 263
Score = 35.1 bits (77), Expect = 0.052
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVIS+ KAY
Sbjct: 263 PRIHFMLSSYAPVISSAKAY 282
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 209 bits (510), Expect = 2e-54
Identities = 90/104 (86%), Positives = 99/104 (95%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
HEQLSVAEITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQ
Sbjct: 283 HEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQ 342
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 292
FVDWCPTGFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 343 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 728 LRXDGAXNVTXTEFQTNXVPYP 663
LR DGA NV TEFQTN VPYP
Sbjct: 242 LRFDGALNVDVTEFQTNLVPYP 263
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -3
Query: 664 PRIHFPLVTYAPVISAEKAY 605
PRIHF L +YAPVISAEKA+
Sbjct: 263 PRIHFMLSSYAPVISAEKAF 282
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 109 bits (262), Expect = 2e-24
Identities = 50/149 (33%), Positives = 84/149 (56%)
Frame = -1
Query: 594 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 415
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I ++ K + FV+
Sbjct: 285 LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVE 344
Query: 414 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFA 235
W P K + PPT ++ A + N+T+I E + R+ +F M+ ++AF
Sbjct: 345 WIPNNVKSSVCDIPPT--------GIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFL 396
Query: 234 HWYVGEGMEEGEFSEAREDLAALEKDYEE 148
HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 397 HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 107 bits (258), Expect = 6e-24
Identities = 49/152 (32%), Positives = 85/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 281 YRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 107 bits (258), Expect = 6e-24
Identities = 49/152 (32%), Positives = 85/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 281 YRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (258), Expect = 6e-24
Identities = 49/152 (32%), Positives = 85/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 281 YRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 107 bits (257), Expect = 8e-24
Identities = 49/152 (32%), Positives = 85/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 281 YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + PPT ++ A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (257), Expect = 8e-24
Identities = 50/149 (33%), Positives = 83/149 (55%)
Frame = -1
Query: 594 LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 415
L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ I I+ K + FV+
Sbjct: 285 LTVPELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVE 344
Query: 414 WCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFA 235
W P K + PP ++ A + N+T+I E + R+ +F M+ ++AF
Sbjct: 345 WIPNNVKSSVCDIPP--------KGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFL 396
Query: 234 HWYVGEGMEEGEFSEAREDLAALEKDYEE 148
HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 397 HWYTGEGMDEMEFTEAESNMNDLVAEYQQ 425
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 106 bits (254), Expect = 2e-23
Identities = 50/152 (32%), Positives = 85/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + I+ K +
Sbjct: 281 YSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + + P G ++ A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSSVC----DIAPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 105 bits (253), Expect = 2e-23
Identities = 49/152 (32%), Positives = 85/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ LSV E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 281 YSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + + P G ++ A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSSVC----DIAPTG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 105 bits (251), Expect = 4e-23
Identities = 48/152 (31%), Positives = 84/152 (55%)
Frame = -1
Query: 603 HEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQ 424
+ L+V E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K +
Sbjct: 281 YRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSY 340
Query: 423 FVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKR 244
FV+W P K + + P G + A + N+T+I E + R+ +F M+ ++
Sbjct: 341 FVEWIPNNVKSSVC----DIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392
Query: 243 AFAHWYVGEGMEEGEFSEAREDLAALEKDYEE 148
AF HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 AFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 51.2 bits (117), Expect = 7e-07
Identities = 40/170 (23%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Frame = -1
Query: 633 RQSSLPRRPTHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKD 469
RQ+++ R+ T V ++ + N MV R+ KY++ + +G+V P
Sbjct: 280 RQANVIRKTT-----VLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQ 334
Query: 468 VNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEA 289
V+ ++ I+ ++ + F+DW P +V ++ + P V ++ + ML++ T+I
Sbjct: 335 VHESLQRIRERKLVNFIDWGPASIQVALSKKSPYVQTSHRVSGL-----MLASHTSIRHL 389
Query: 288 WARLDHKFDLMYAKRAFAHWYVGEGM----EEGEFSEAREDLAALEKDYE 151
++R ++D + K+AF Y M + EF E+R+ + +L +Y+
Sbjct: 390 FSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 48.4 bits (110), Expect = 5e-06
Identities = 38/170 (22%), Positives = 84/170 (49%), Gaps = 9/170 (5%)
Frame = -1
Query: 633 RQSSLPRRPTHEQLSVAEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKD 469
RQ+++ R+ T V ++ + N MV R+ KY++ + +G+V P
Sbjct: 280 RQANVIRKTT-----VLDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQ 334
Query: 468 VNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEA 289
V+ ++ I+ ++ + F++W P +V ++ + P V ++ + ML++ T+I
Sbjct: 335 VHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLASHTSIRHL 389
Query: 288 WARLDHKFDLMYAKRAFAHWYVGEGM----EEGEFSEAREDLAALEKDYE 151
+++ ++D + K+AF Y M + EF E+R+ + +L +Y+
Sbjct: 390 FSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 457 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 564
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 281 ALTTSSTSCTPSVLSRTGTSVRVWRRESSPKPVRTW 174
A ++S + +P+V+S S R WR SS P+R W
Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 376 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 480
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.5 bits (63), Expect = 2.6
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
Frame = -2
Query: 665 PPYPLPTGHVRASHLCREGLPMNSFPSPRSQTHASSPPTRW*NATPVMAS-------TWL 507
PP P P VR L + G P P P A+S P+ + V A+ +W+
Sbjct: 529 PPTPSPPHPVRPQ-LAQAGAP----PPPPPLPAAASKPSEQLQHSVVQATEPLSQGNSWM 583
Query: 506 AVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEAT 348
++ + + P +LP P + S S +P S++ ++ P AT
Sbjct: 584 SLAGSTFQTVPNEKNLITLPPTPPLASTSHASPEPSSKTTNSLLLSPQASPAT 636
>At5g45330.1 68418.m05564 expressed protein ; expression supported
by MPSS
Length = 571
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Frame = -2
Query: 656 PLPTGHVRASHLCREGLPMNSFPSP--RSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 483
P+P+ V+ + G+P+ P S T + P ++P+M + VVT
Sbjct: 206 PIPS-FVQGNKFASSGVPLGMMQKPVSSSSTIPNGPQIIDYFSSPIMGL--VDDSSQVVT 262
Query: 482 SYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 366
P + + S S PS L + P SVS+ PP
Sbjct: 263 RSPDVSSNQSYSSNPSPLGQTQLHTPPGLASVSSNLSPP 301
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 153 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 269
R +R +PG +G+ R+ PP P R S + H +T +T
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 492 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 349
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 418 DELDSTLGFDGSDGRVHILGYDVTTVQ 498
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +3
Query: 66 ASAP*KIFHWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRR 227
A+A + H++S P +RS +LL++P R P P L + LPPP P
Sbjct: 301 ATASPEFRHFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSS 360
Query: 228 TSA 236
+S+
Sbjct: 361 SSS 363
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 665 PPYPLPTGHVRAS---HLCREGLPMNSFPSPRSQTHASSPPT 549
PP LP A+ L ++GLP F P + H SPP+
Sbjct: 239 PPASLPQPPASAAAPPSLTQQGLPPQQFIQPPASQHGLSPPS 280
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 260 SCTPSVLSRTGTSVRVWRRESSPK 189
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 671 PYPPYPLPTGHVRASHLCREGLPMNSFPSPRSQTHASSPP 552
P+PP+P+ ++ P NS P P SQ+ +S P
Sbjct: 377 PHPPFPMSQPPPTSNPFPLSQPPSNSKPFPMSQSSQNSKP 416
>At1g51355.1 68414.m05776 expressed protein
Length = 116
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -2
Query: 635 RASHLCREGLPMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTS-YPRM*TR 459
+ SH P + S + S+ PT +PV A + CCT S P M T
Sbjct: 18 KRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESG---CCTPEKSRIPEMLTC 74
Query: 458 PSLPSKPSVLSN 423
P P K V N
Sbjct: 75 PPAPKKQKVAQN 86
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,162
Number of Sequences: 28952
Number of extensions: 372585
Number of successful extensions: 1428
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1418
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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