Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F06
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.86 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.1  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 318 RSWCSRETQACHNGT 274
           RSW +RE+Q C+N +
Sbjct: 353 RSWVTRESQICNNSS 367


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = -3

Query: 133 NVKKEPENGDGVEEGSRKRTASTAN--------AEDPDVSIEVKQE 20
           ++ K P N +G+E  S +R  S A         A D D+S+   Q+
Sbjct: 190 SLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQ 235


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 217 SYXQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPE 113
           ++  G + + GKP E T  +  +   N N+K + E
Sbjct: 69  NFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKE 103


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 44  IGIFCVSCACRSLSAAFLDTVTILRFFLNI 133
           I IFC + + R+ S  F+  + I  FF+ I
Sbjct: 70  IWIFCAAKSLRTPSNMFVVNLAICDFFMMI 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,755
Number of Sequences: 438
Number of extensions: 4281
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)