Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP02_T7_F04
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    27   0.15 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -1

Query: 762 VXQXPNDMQTXTFKFGFRMHNSDEMDFVI--DKRIYSM---FESGAWDVTDL 622
           V   P D QT   KFG    N D++   +  +K    +   ++SG WD+ ++
Sbjct: 155 VTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINV 206


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 315 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 217
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 750 PNDMQTXTFKFGFRMHNSDEMDFVIDKRIYSM 655
           P D       FG  +H+ +E++  +DK+ + M
Sbjct: 177 PYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 331 WRAAAACTRDTRGALPASPSRLDT 402
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 471 LAARH*TTTSCGFSVH 424
           LAAR  T++SC +  H
Sbjct: 331 LAAREITSSSCSYMAH 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,375
Number of Sequences: 438
Number of extensions: 2182
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)