Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_M15
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   141   1e-34
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   138   9e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   0.60 
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.6  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.4  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   7.4  
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    26   7.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  141 bits (341), Expect = 1e-34
 Identities = 66/101 (65%), Positives = 78/101 (77%)
 Frame = -2

Query: 624 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 445
           EPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+L
Sbjct: 120 EPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYL 179

Query: 444 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
           LAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 180 LAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = -1

Query: 817 WXKLFLXXXXXXXXXXPXDVFVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAF 656
           W KL L          P DV V+S+R +G RAVLKFAAHTG T IAGRFTPG F
Sbjct: 57  WEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNF 110


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  138 bits (334), Expect = 9e-34
 Identities = 65/99 (65%), Positives = 77/99 (77%)
 Frame = -2

Query: 624 EPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWL 445
           EPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+L
Sbjct: 121 EPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYL 180

Query: 444 LAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
           LAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 181 LAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 35/54 (64%), Positives = 36/54 (66%)
 Frame = -1

Query: 817 WXKLFLXXXXXXXXXXPXDVFVISSRPFGQRAVLKFAAHTGXTXIAGRFTPGAF 656
           W KL L          P DV VISSRP+G RAVLKFAAHTG T IAGRFTPG F
Sbjct: 58  WEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNF 111


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 621 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 441 AR 436
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 669 HQVLFTXPDPKLHSXEPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDI 499
           + ++ T    +  + +P + ++     D   +   T A    +  + LC+ +S  RF D+
Sbjct: 40  YSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADL 98

Query: 498 AIPCNTKSSHSI 463
           A+  NTK +H I
Sbjct: 99  AVAANTKFTHFI 110


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 371 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 692 YAYCGTFHTRCFLLXQIXSCIPVNLVS*LYWTL-HKTI 582
           Y Y G FH    +L ++ S +P+     LYW++ H T+
Sbjct: 358 YLYIGCFHMHTQVLNRMSSALPL-----LYWSMAHATL 390


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 663 VLFTXPDPKLHSXEPR-LLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 502
           VL+T      H   PR +L ++D AQD   I E SYV++    L    S L F D
Sbjct: 48  VLYTERLITCHQALPRWILKLIDGAQDCY-IRETSYVDLKARTLTLLTSNLTFSD 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,587
Number of Sequences: 5004
Number of extensions: 55551
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)