SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D24
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   301   3e-82
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei...    74   1e-13
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei...    74   1e-13
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    40   0.003
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    39   0.003
At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilas...    38   0.010
At3g44310.2 68416.m04759 nitrilase 1 (NIT1) identical to SP|P329...    37   0.018
At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P329...    37   0.018
At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P460...    36   0.024
At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P329...    36   0.024
At5g22300.1 68418.m02601 nitrilase 4 (NIT4) identical to SP|P460...    34   0.095
At2g44760.1 68415.m05571 expressed protein                             29   2.7  
At2g03980.1 68415.m00365 GDSL-motif lipase/hydrolase family prot...    29   3.6  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    29   3.6  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    29   3.6  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    28   6.2  
At5g45720.1 68418.m05621 hypothetical protein                          28   6.2  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  301 bits (739), Expect = 3e-82
 Identities = 139/212 (65%), Positives = 166/212 (78%)
 Frame = -3

Query: 759 DILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF 580
           ++LWNTAV+I + GN+IGKHRKNHIPRVGDFNES YYMEG+TGHPVF T +GKIAVNIC+
Sbjct: 191 EVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGDTGHPVFETVFGKIAVNICY 250

Query: 579 GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYE 400
           GRHH LNW+ FG NGAEIVFNPSAT+ GE  SE MW +EARNAAI N YF  +INRVG E
Sbjct: 251 GRHHPLNWLAFGLNGAEIVFNPSATV-GE-LSEPMWPIEARNAAIANSYFVGSINRVGTE 308

Query: 399 EFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRD 220
            FPN FTS DGKP H D G FYGSS+F  PD    P LSR +DGLLI+ +DLNL RQ +D
Sbjct: 309 VFPNPFTSGDGKPQHNDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQYKD 368

Query: 219 RRCYYMTQRLDMYVNSLSKVLELDYKPQVVHE 124
           +  + MT R ++Y + L+K ++ D+KPQVV +
Sbjct: 369 KWGFRMTARYEVYADLLAKYIKPDFKPQVVSD 400


>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 326

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 5/195 (2%)
 Frame = -3

Query: 750 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRH 571
           +N+  +I   G  +G +RK+HIP    + E  Y+  G+TG  VF T++ KI V IC+ + 
Sbjct: 131 YNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 190

Query: 570 HVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM-----WNVEARNAAITNCYFTAAINRVG 406
                      GAEI+F P+A I  E   + +     W    +  A  N     A NR+G
Sbjct: 191 FPEAARAMVLQGAEILFYPTA-IGSEPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIG 249

Query: 405 YEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQI 226
                 E    +  P+      FYG+S+  GP G          + +L+A  DL++ +  
Sbjct: 250 -----KEIIETEHGPSQI---TFYGTSFIAGPTGEIVAEADDKSEAVLVAQFDLDMIKSK 301

Query: 225 RDRRCYYMTQRLDMY 181
           R     +  +R D+Y
Sbjct: 302 RQSWGVFRDRRPDLY 316


>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 299

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 5/195 (2%)
 Frame = -3

Query: 750 WNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRH 571
           +N+  +I   G  +G +RK+HIP    + E  Y+  G+TG  VF T++ KI V IC+ + 
Sbjct: 104 YNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 163

Query: 570 HVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM-----WNVEARNAAITNCYFTAAINRVG 406
                      GAEI+F P+A I  E   + +     W    +  A  N     A NR+G
Sbjct: 164 FPEAARAMVLQGAEILFYPTA-IGSEPQDQGLDSRDHWRRVMQGHAGANVVPLVASNRIG 222

Query: 405 YEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQI 226
                 E    +  P+      FYG+S+  GP G          + +L+A  DL++ +  
Sbjct: 223 -----KEIIETEHGPSQI---TFYGTSFIAGPTGEIVAEADDKSEAVLVAQFDLDMIKSK 274

Query: 225 RDRRCYYMTQRLDMY 181
           R     +  +R D+Y
Sbjct: 275 RQSWGVFRDRRPDLY 289


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
 Frame = -3

Query: 759 DILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIA 595
           D L+NT  V    G +  KHRK H     IP    F ES     G T   +  T  G+I 
Sbjct: 180 DRLYNTCCVFGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGET-PTIVDTDVGRIG 238

Query: 594 VNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTA 424
           + IC+        M++   GA ++  P A     G     W +  R  A  N  + A
Sbjct: 239 IGICYDIRFQELAMIYAARGAHLLCYPGAFNMTTG--PLHWELLQRARATDNQLYVA 293


>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
 Frame = -3

Query: 759 DILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIA 595
           D L+NT  V    G +  KHRK H     IP    F ES     G T   +  T  G+I 
Sbjct: 180 DRLYNTCCVFGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGET-PTIVDTDVGRIG 238

Query: 594 VNICFGRHHVLNWMMFGQNGAEIVFNPSA 508
           + IC+        M++   GA ++  P A
Sbjct: 239 IGICYDIRFQELAMIYAARGAHLLCYPGA 267


>At4g08790.1 68417.m01448 nitrilase, putative similar to nitrilase 1
           [Mus musculus] GI:3228668; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 307

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVN 589
           L NT VVI D G +   ++K H     +P    + ES++ + G T      +  G++ + 
Sbjct: 128 LCNTHVVIDDAGMIRDTYQKMHLFDVDVPGGSSYKESSFTVPG-TKIVSVDSPVGRLGLT 186

Query: 588 ICFG-RHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAI-TNCYFTAA 421
           +C+  R   +   +  +  A+++  PSA     G  E  W +  R  AI T CY  AA
Sbjct: 187 VCYDLRFPKIYQQLRFEQKAQVLLVPSAFTKVTG--EAHWEILLRARAIETQCYVIAA 242


>At3g44310.2 68416.m04759 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 224

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGR 574
           L+ T +  S  G  +GKHRK  +P         +     +  PV+ T  GK+   IC+  
Sbjct: 11  LYCTVLFFSPQGQFLGKHRK-LMPT--SLERCIWGQGDGSTIPVYDTPIGKLGAAICWEN 67

Query: 573 HHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAIT-NCYFTAAINRVGYEE 397
              L        G E+   P+A    +G  E  W     + AI   C+  +A      + 
Sbjct: 68  RMPLYRTALYAKGIELYCAPTA----DGSKE--WQSSMLHIAIEGGCFVLSACQFCQRKH 121

Query: 396 FPNE----FTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDL 244
           FP+     FT       H  + +  G S    P G    G +   +GL+ A +DL
Sbjct: 122 FPDHPDYLFTDWYDDKEHDSI-VSQGGSVIISPLGQVLAGPNFESEGLVTADIDL 175


>At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGR 574
           L+ T +  S  G  +GKHRK  +P         +     +  PV+ T  GK+   IC+  
Sbjct: 133 LYCTVLFFSPQGQFLGKHRK-LMPT--SLERCIWGQGDGSTIPVYDTPIGKLGAAICWEN 189

Query: 573 HHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAIT-NCYFTAAINRVGYEE 397
              L        G E+   P+A    +G  E  W     + AI   C+  +A      + 
Sbjct: 190 RMPLYRTALYAKGIELYCAPTA----DGSKE--WQSSMLHIAIEGGCFVLSACQFCQRKH 243

Query: 396 FPNE----FTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDL 244
           FP+     FT       H  + +  G S    P G    G +   +GL+ A +DL
Sbjct: 244 FPDHPDYLFTDWYDDKEHDSI-VSQGGSVIISPLGQVLAGPNFESEGLVTADIDL 297


>At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P46010
           Nitrilase 3 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 46/175 (26%), Positives = 65/175 (37%), Gaps = 5/175 (2%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGR 574
           L+ TA+  S  G  +GKHRK  +P         +     +  PV+ T  GKI   IC+  
Sbjct: 133 LYCTALFFSPQGQFLGKHRK-VMPT--SLERCIWGQGDGSTIPVYDTPIGKIGAAICWEN 189

Query: 573 HHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAIT-NCYFTAAINRVGYEE 397
              L        G EI   P+A  + E      W     + A+   C+  +A       E
Sbjct: 190 RMPLYRTALYAKGIEIYCAPTADYSLE------WQASMIHIAVEGGCFVLSAHQFCKRRE 243

Query: 396 FPNE----FTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDL 244
           FP      F        H D  +  G S    P G    G +   +GL+ A +DL
Sbjct: 244 FPEHPDYLFNDIVDTKEH-DPTVSGGGSVIISPLGKVLAGPNYESEGLVTADLDL 297


>At3g44300.1 68416.m04757 nitrilase 2 (NIT2) identical to SP|P32962
           Nitrilase 2 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 339

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 4/174 (2%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGR 574
           L+ TA+  S  G  +GKHRK  +P         +     +  PV+ T  GK+   IC+  
Sbjct: 126 LYCTALFFSPQGQFLGKHRK-LMPT--SLERCIWGQGDGSTIPVYDTPIGKLGAAICWEN 182

Query: 573 HHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAIT-NCYFTAAINRVGYEE 397
              L        G E+   P+A    +G  E  W     + AI   C+  +A      ++
Sbjct: 183 RMPLYRTALYAKGIELYCAPTA----DGSKE--WQSSMLHIAIEGGCFVLSACQFCLRKD 236

Query: 396 FPN--EFTSADG-KPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDL 244
           FP+  ++   D       D  +  G S    P G    G +   +GL+ A +DL
Sbjct: 237 FPDHPDYLFTDWYDDKEPDSIVSQGGSVIISPLGQVLAGPNFESEGLITADLDL 290


>At5g22300.1 68418.m02601 nitrilase 4 (NIT4) identical to SP|P46011
           Nitrilase 4 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 355

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 5/175 (2%)
 Frame = -3

Query: 753 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF-G 577
           L+ T +     G  +GKHRK  +P   +     +  +G+T  PVF T  GKI   IC+  
Sbjct: 144 LYCTVLFFDSQGLFLGKHRKL-MPTALERCIWGFG-DGST-IPVFDTPIGKIGAAICWEN 200

Query: 576 RHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAIN----RV 409
           R   L   M+ + G EI   P+A       S   W     + A+    F  + N    R 
Sbjct: 201 RMPSLRTAMYAK-GIEIYCAPTA------DSRETWLASMTHIALEGGCFVLSANQFCRRK 253

Query: 408 GYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDL 244
            Y   P    S   +    D  +  G S    P G+   G +   + L+ A +DL
Sbjct: 254 DYPSPPEYMFSGSEESLTPDSVVCAGGSSIISPLGIVLAGPNYRGEALITADLDL 308


>At2g44760.1 68415.m05571 expressed protein 
          Length = 504

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -3

Query: 759 DILWNTAVVISDTGNVI-GKHRKNHIP-RVGDFNESNYYMEGNTGHPVFATRYGKIAVNI 586
           D + N  V++ D  ++  G + +  +   VG+ +ESNYY+      P F  ++ +  V  
Sbjct: 262 DSMINDVVMVFDVADMQDGSYSRGPVTIPVGEMSESNYYLT-----PTF--KFEQCLVKG 314

Query: 585 CFGRHHVLNWMMFGQNGAEI 526
           C  R  V++ + F   GA+I
Sbjct: 315 CHKRLRVVHTIEFANGGADI 334


>At2g03980.1 68415.m00365 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich protein APG from
           Brassica napus (SP|P40603 ), Arabidopsis thaliana
           (GI:22599); contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 367

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 437 QFVIAAFLASTFHMYSLP---PSPAIVADGLKTISAPFCPNIIQ--FKTWCRP 580
           +F+  +FL S ++ Y L    PS   V   L  +++P CPN+      T C+P
Sbjct: 271 KFIKTSFLYSDYYNYMLGLRGPSSNQVGSSLLNVTSPCCPNVYDGGQLTSCKP 323


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
 Frame = -3

Query: 609 YG-KIAVNICFGRHHVLNWMMFGQNG---------AEIVFNPSATIAGEGGSEYM----- 475
           YG  + + + FGR HV    +F  +G          E++FN    +     ++Y+     
Sbjct: 194 YGYAVTMRMLFGRRHVTKENVFSDDGRLGNAEKHHLEVIFNTLNCLPSFSPADYVERWLR 253

Query: 474 -WNVEARNAAIT-NCYFTAAINRVGYEEFPNEFTSADGKPAHKD 349
            WNV+ +   +T NC    + N    +E    +    GK A +D
Sbjct: 254 GWNVDGQEKRVTENCNIVRSYNNPIIDERVQLWREEGGKAAVED 297


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
 Frame = -3

Query: 609 YG-KIAVNICFGRHHVLNWMMFGQNG---------AEIVFNPSATIAGEGGSEYM----- 475
           YG  + + + FGR HV    +F  +G          E++FN    +     ++Y+     
Sbjct: 194 YGYAVTMRMLFGRRHVTKENVFSDDGRLGNAEKHHLEVIFNTLNCLPSFSPADYVERWLR 253

Query: 474 -WNVEARNAAIT-NCYFTAAINRVGYEEFPNEFTSADGKPAHKD 349
            WNV+ +   +T NC    + N    +E    +    GK A +D
Sbjct: 254 GWNVDGQEKRVTENCNIVRSYNNPIIDERVQLWREEGGKAAVED 297


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
 Frame = +1

Query: 79  RWSISAWNRLKLLFIFVYD---LRLV----IQLEYFAETVHVHVQALGHVI-TTSVSDLS 234
           RW I    +    F+F  +   LRLV    ++L Y  + VH   Q++GHVI  T+  +++
Sbjct: 351 RWDIGLNKKRVAYFVFPKEENELRLVPGDELRLRYSGDAVHPSWQSVGHVIKLTAQEEVA 410

Query: 235 VQVQVH 252
           ++++ +
Sbjct: 411 LELRAN 416


>At5g45720.1 68418.m05621 hypothetical protein
          Length = 900

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 735 VISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATR 610
           V+ D+   IG+H +NHI      +  N+    N   PV   R
Sbjct: 9   VLKDSNGDIGEHLRNHIHLTNCIHLKNHMHNNNKQSPVLTDR 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,656
Number of Sequences: 28952
Number of extensions: 344346
Number of successful extensions: 1035
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -