Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D22
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                38   0.007
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -3

Query: 713 QGLXRAFRNIPGVEXXXXXXXXXXXLAPGGHXGR 612
           QGL +AFRN+PGVE           L PGGH GR
Sbjct: 212 QGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = -3

Query: 524 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 363
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPY
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPY 270


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = -3

Query: 551 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 405
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -3

Query: 476 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 372
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 613 VSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQR-WPTLTSHVFSSLMRSGRSSVLPT 437
           + SS L+ H+ G+    GHGR   +      C SQ  WP + S       + G +  LPT
Sbjct: 36  IYSSVLAAHNRGVIFDVGHGRGSFSWTVAELCASQDFWPDVISTDLHVDCQKGPAYDLPT 95

Query: 436 NA*SVLH 416
               +LH
Sbjct: 96  VMTKMLH 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,489,828
Number of Sequences: 59808
Number of extensions: 313267
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)