Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D22
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   124   5e-29
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   120   1e-27

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  124 bits (300), Expect = 5e-29
 Identities = 59/115 (51%), Positives = 77/115 (66%)
 Frame = -3

Query: 707 LXRAFRNIPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDPLFGSWKTPSKQKKN 528
           + +AFRN+PGVE           LAPGGH GRFVIWT+SAF +L+ ++GS++ PS++KK 
Sbjct: 223 IVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 282

Query: 527 FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 363
           + LP+ KM N DL R++ SDEI+ V+    K   RA  K NPL N   MLKLNPY
Sbjct: 283 YVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPY 337


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  120 bits (289), Expect = 1e-27
 Identities = 58/122 (47%), Positives = 77/122 (63%)
 Frame = -3

Query: 728 FXTXIQGLXRAFRNIPGVEXXXXXXXXXXXLAPGGHXGRFVIWTQSAFGRLDPLFGSWKT 549
           F T    + +AFRN+PGVE           LAPGGH GRFVIWT+SAF +L+ ++GS++ 
Sbjct: 217 FGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEK 276

Query: 548 PSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLN 369
           PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NPL N   M KLN
Sbjct: 277 PSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLN 336

Query: 368 PY 363
           PY
Sbjct: 337 PY 338



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 778 GXMGXRRXIQRKGPLIIF 725
           G M  RR I RKGPL++F
Sbjct: 200 GKMRNRRYISRKGPLVVF 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,251,702
Number of Sequences: 28952
Number of extensions: 222452
Number of successful extensions: 536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)