Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D19
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)            163   1e-40
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               29   4.2  
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)            29   5.6  

>SB_48459| Best HMM Match : B12-binding_2 (HMM E-Value=3.3)
          Length = 115

 Score =  163 bits (397), Expect = 1e-40
 Identities = 77/114 (67%), Positives = 89/114 (78%)
 Frame = -3

Query: 529 VLVDLTDGGLEYTFECIGNVGTMRAALEACHKXXXXXXXXXXXXXGEEISTRPFQLVTGR 350
           VLVD+TDGGL+YTFECIGNV TMR ALEACHK             G+EISTRPFQLVTGR
Sbjct: 1   VLVDMTDGGLDYTFECIGNVHTMRQALEACHKGWGESVIIGVAAGGQEISTRPFQLVTGR 60

Query: 349 TWKGTAFGGYKSRESVPKLVDEYLEKKLPLDEFVTHNVPLKEINEAFHLMHAGK 188
            WKGTAFGGYKS + VP+LV++YL  K+ +DEFVTHN+ L +INEAF LMH G+
Sbjct: 61  VWKGTAFGGYKSGDGVPQLVEDYLAGKVMVDEFVTHNMGLDKINEAFDLMHRGE 114


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 21/81 (25%), Positives = 32/81 (39%)
 Frame = +2

Query: 182 DRFSSMHQMECLIDLLQRHIVSDKFI*RQLLLQVLIYKLWYTFSTFVTSKSCSLPGATCN 361
           D +   H  + LI   +RH +   F     L+  + YK W  FS  +       P  TC 
Sbjct: 573 DEYMPSHS-KLLIHRKERHDLERAF---HCLICGVTYKSWRPFSYHLFQAHSDTPPITCP 628

Query: 362 KLEWTSADLFSNSSYTNDH*H 424
                  D+FS  ++  +H H
Sbjct: 629 HCPKKFHDIFSFDNHQKEHRH 649


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +3

Query: 384 ISSPTAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSRPPSVKS 521
           I +   ATP++T T     + S  AL+ P  P  S   S PP+  S
Sbjct: 216 IQTSQPATPIVTVTRCTDTKCSKPALVTPNIPRSSDTPSSPPATSS 261


>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
          Length = 509

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = +3

Query: 327 PKAVPFQVRPVTSWN-GRVLISSPTAATPMITDTPHPLWQASSAALMVPTFPIHSKVYSR 503
           P A     +P T+   G    + PT  TP  T TP      +  A   PT P  +   + 
Sbjct: 111 PPATTTPTKPTTTTPPGTTTPTKPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPAT 170

Query: 504 PPSVKSTNT 530
               KST T
Sbjct: 171 TTPTKSTTT 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,594,102
Number of Sequences: 59808
Number of extensions: 442303
Number of successful extensions: 1321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)