Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D16
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 31 1.3
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 30 2.2
U67954-4|AAM54180.1| 345|Caenorhabditis elegans Wrapper/rega-1/... 30 2.2
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 30 2.2
AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobuli... 30 2.2
AC006720-9|AAF60443.2| 480|Caenorhabditis elegans Hypothetical ... 30 2.2
U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical pr... 24 2.9
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 5.1
U55374-4|AAB36866.2| 589|Caenorhabditis elegans Immunoglobulin-... 28 6.8
U55374-3|ABS19462.1| 591|Caenorhabditis elegans Immunoglobulin-... 28 6.8
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 6.8
Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical ... 28 8.9
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = -2
Query: 473 CSRLASSVWE*HRVRE--VEPVKL*FAWWLVRFVAVRSLHGGKMSCESAQVAGGETSAVA 300
C A +W R + +EP++ A AV GG +CE+ + G A A
Sbjct: 56 CRGSAKDIWSEVRTLKTALEPIQNRTARQAYADAAVHGGGGGGGNCEACCLPGPAGPAGA 115
Query: 299 -AHPVRENR--ADRLDGXGGRPTGPPNDEITPP 210
+P R + A L G G+P P + ITPP
Sbjct: 116 PGNPGRPGKPGAPGLPGNPGKPPVQPCEPITPP 148
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 389 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>U67954-4|AAM54180.1| 345|Caenorhabditis elegans
Wrapper/rega-1/klingon homologprotein 1, isoform c
protein.
Length = 345
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 452 VWE*HRVREVEPVKL*FAWWLVRFVAVRSLHGGKMSCESAQVAGGETSAVAAHPVRENRA 273
VW + E +K + V+ H GK +C + +AG + + + H +
Sbjct: 151 VWTKQAAKLPEDIKREHGGARIVITEVKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQG 210
Query: 272 DRLDGXGGRPTGPP 231
+R GRP GPP
Sbjct: 211 ER----EGRP-GPP 219
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/54 (37%), Positives = 22/54 (40%)
Frame = +2
Query: 389 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P TT TT P + V+PT T ARTST T Q P T S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527
>AF456364-1|AAL60235.1| 344|Caenorhabditis elegans immunoglobulin
domain-containingprotein WRK-1C protein.
Length = 344
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 452 VWE*HRVREVEPVKL*FAWWLVRFVAVRSLHGGKMSCESAQVAGGETSAVAAHPVRENRA 273
VW + E +K + V+ H GK +C + +AG + + + H +
Sbjct: 150 VWTKQAAKLPEDIKREHGGARIVITEVKKHHAGKYNCLAENIAGSDRATIDIHVAEPLQG 209
Query: 272 DRLDGXGGRPTGPP 231
+R GRP GPP
Sbjct: 210 ER----EGRP-GPP 218
>AC006720-9|AAF60443.2| 480|Caenorhabditis elegans Hypothetical
protein Y17G9B.1 protein.
Length = 480
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 135 VLWQVQPETSTCVPELQCVTDKWFWLPLYVPFKV 34
+LWQ+ +TC P LQ ++W L L + FK+
Sbjct: 421 ILWQL---ITTCKPRLQVDKERWIQLLLNIKFKI 451
>U39999-6|AAA81107.2| 198|Caenorhabditis elegans Hypothetical
protein F41G3.10 protein.
Length = 198
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 464 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 559
T C +T T TC+ NP T S T
Sbjct: 83 TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114
Score = 23.8 bits (49), Expect(2) = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 314 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 412
S L + V +TF L QQ+L TT+T++
Sbjct: 10 SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/58 (27%), Positives = 21/58 (36%)
Frame = +2
Query: 386 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 559
LP TT+ T+ P + + +KPT T T K P T P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648
>U55374-4|AAB36866.2| 589|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform a protein.
Length = 589
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 RDLVVWRTRRPASXTVEAICP 278
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>U55374-3|ABS19462.1| 591|Caenorhabditis elegans
Immunoglobulin-like cell adhesionmolecule family protein
3, isoform b protein.
Length = 591
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 216 RDLVVWRTRRPASXTVEAICP 278
R +V WR R+P V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Frame = -2
Query: 359 GGKMSCESAQVAG-GETSAVAAHPVRENR--ADRLDGXGGRPTGPPNDEIT-PPARTADI 192
GG SC + G S P R R A L G GRP P IT PP R
Sbjct: 101 GGGGSCSGCCLPGPAGPSGAPGKPGRPGRPGAGGLPGNPGRPPAQPCHPITPPPCRPCPQ 160
Query: 191 GAP 183
G P
Sbjct: 161 GPP 163
>Z50795-1|CAA90662.1| 502|Caenorhabditis elegans Hypothetical
protein R166.1 protein.
Length = 502
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 307 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 438
A + P T S + PP TA + + NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248
>AL117203-9|CAB60420.3| 675|Caenorhabditis elegans Hypothetical
protein Y48C3A.12 protein.
Length = 675
Score = 27.9 bits (59), Expect = 8.9
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 374 PQQILPATTQTTILRV-PPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 550
P + PA + T+ PP+ + P+L +PT Q S + + + +N AA+
Sbjct: 250 PAPVAPAPSIETLTSTSPPVTQQLAPSLSEPTFQVIQTEESKNMSMDSV---KNVVDAAA 306
Query: 551 PDTNAPDVLSYRSRRLQXV 607
AP LS +S RL V
Sbjct: 307 LSAPAPAPLS-QSDRLNHV 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,976,772
Number of Sequences: 27780
Number of extensions: 394288
Number of successful extensions: 1350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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