Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D16
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25840.1 68416.m03219 protein kinase family protein contains ...    31   0.89 
At2g33570.1 68415.m04114 expressed protein                             30   2.1  
At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-relate...    29   2.7  
At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TS...    29   3.6  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    29   3.6  
At5g54810.1 68418.m06827 tryptophan synthase, beta subunit 1 (TS...    29   4.7  
At1g44890.1 68414.m05143 expressed protein                             28   6.3  
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    28   8.3  
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family...    28   8.3  
At3g42060.1 68416.m04315 myosin heavy chain-related                    28   8.3  
At1g60960.1 68414.m06862 metal transporter, putative (IRT3) iden...    28   8.3  

>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +1

Query: 385 LTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 564
           + SHH  ++ + S+S       TE+A++ H    HKH  HR   H   + E+   +  + 
Sbjct: 7   IESHHRKHHRSSSSS-----DDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDE 61

Query: 565 TGRLILQVTTTSXCV 609
           T   IL VT  +  V
Sbjct: 62  TE--ILDVTPAAPIV 74


>At2g33570.1 68415.m04114 expressed protein
          Length = 496

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/99 (25%), Positives = 37/99 (37%)
 Frame = +2

Query: 410 ILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRS 589
           +  +PP  H++  T R P +      T+T  +        N  T+ S  T A       +
Sbjct: 35  VWNLPPYYHNLISTAR-PCSAVTTTTTTTLLSSSNFTSAENFTTSLSTTTAAASQKYDST 93

Query: 590 RRLQXVSIFLPHGKLACFLVCLLAGARSHRTCSVIGIES 706
                  +F P G  A   V + A      T SVIG+ S
Sbjct: 94  PSDPNKRVFQPFGNAAALFVLMGAYRGGPTTFSVIGLAS 132



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 358 PCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSST 486
           PC  +T T  T+  ++ NFT + + T   S T  A  +   ST
Sbjct: 51  PCSAVTTTTTTTLLSSSNFTSAENFTTSLSTTTAAASQKYDST 93


>At1g09460.1 68414.m01058 glucan endo-1,3-beta-glucosidase-related
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 330

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/53 (35%), Positives = 22/53 (41%)
 Frame = +2

Query: 338 THKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTST 496
           T+ T    A F P  I P    TT+  VPP+     PTL  P   T    T T
Sbjct: 39  TNPTTTPTATFPPVTITPTNPATTVPIVPPVTTIPPPTLTPPPVITIPPPTLT 91


>At4g27070.1 68417.m03892 tryptophan synthase, beta subunit 2 (TSB2)
           identical to SP|25269
          Length = 475

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 696 PITLHVR*LRAPASKQTRKQASXPWGRKID 607
           P  + VR   A   K+TRKQA   WG K D
Sbjct: 279 PYPMMVRDFHAVIGKETRKQAMEKWGGKPD 308


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 394 HHANYNFTGSTSLT--RCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERT 567
           HH  +  +G T     + +SH  E + +H S +HKH  H ++       EH     H  +
Sbjct: 545 HHHAHGGSGCTHSHSHQSHSHKNEEHHQH-SDSHKHEEHHQHSDSHKHEEHHEHDHHHHS 603


>At5g54810.1 68418.m06827 tryptophan synthase, beta subunit 1 (TSB1)
           identical to SP|P14671
          Length = 470

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 696 PITLHVR*LRAPASKQTRKQASXPWGRKID 607
           P  + VR   A   K+TRKQA   WG K D
Sbjct: 274 PYPMMVRDFHAVIGKETRKQALEKWGGKPD 303


>At1g44890.1 68414.m05143 expressed protein
          Length = 281

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 427 SLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 558
           SL RC S     N +   S++   +H +N     EP H+  + H
Sbjct: 2   SLVRCLSLRSVLNPQRYRSSYSFLIHLQNPREEEEPTHKTRSYH 45


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
            putative ATP-dependent helicases
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = +2

Query: 455  RKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRSRRLQXVSIFLPHG-K 631
            +KPT  T   R +T + G   IR+RN       + + P   +Y+S   Q V I +P   K
Sbjct: 874  KKPTPQTHACRVTTKWFGFLRIRRRNNEVIDDVELSLPS-YTYQS---QAVWIQVPMSVK 929

Query: 632  LACFLVCLLAGARSHRTC-SVIGIESSR-S*NFSD 730
            LA     L   A  H  C +++ +  +R + N+SD
Sbjct: 930  LAVETANLPFRAGLHAACHALVNVVPTRVTCNYSD 964


>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 932

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 295 WAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGST 426
           W    E++   +C DS D + P   L AT +  + ANY    ST
Sbjct: 279 WVIYGELACNGSCPDSSDEISPIYSLWATFIGLYIANYVVERST 322


>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 87  EALEHTLTSLVGPATAQSPTRRRTLAKVQSERGGSNIGSP 206
           + L+ T  S+  P+   S +R+R  ++   E G SN+G P
Sbjct: 440 KVLKETTGSVPFPSVGGSRSRKRDSSRRSPETGPSNVGKP 479


>At1g60960.1 68414.m06862 metal transporter, putative (IRT3)
           identical to putative metal transporter IRT3
           [Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar
           to iron-regulated transporter 1 [Lycopersicon
           esculentum] gi|9716481|gb|AAF97509; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 425

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 454 EEANREHLSSTHKHALHRKNLHPP 525
           E++   H+   H HA H ++ HPP
Sbjct: 204 EDSGGIHIVGIHAHAAHHRHSHPP 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,029,614
Number of Sequences: 28952
Number of extensions: 361110
Number of successful extensions: 1071
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)