Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D14
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 36 0.038
U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astaci... 32 0.46
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 31 1.4
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical... 29 3.3
AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical... 29 3.3
AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical... 29 3.3
AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical ... 29 3.3
AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical ... 29 3.3
AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical ... 29 3.3
U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 28 7.5
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 28 10.0
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 10.0
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 28 10.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 10.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 10.0
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 28 10.0
L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembl... 28 10.0
AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein... 28 10.0
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 28 10.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 10.0
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 35.9 bits (79), Expect = 0.038
Identities = 24/76 (31%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P FN P SGG P P G GP A GP N P
Sbjct: 405 GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 464
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 465 GPPGPFNPSGAPPSGG 480
Score = 34.7 bits (76), Expect = 0.087
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P FN P SGG P P G GP + A GP + P
Sbjct: 255 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSG 314
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 315 GPPGPFNPSGAPPSGG 330
Score = 34.7 bits (76), Expect = 0.087
Identities = 23/76 (30%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P FN P SGG P P G GP + A GP + P
Sbjct: 345 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSG 404
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 405 GPPGPFNPSGAPPSGG 420
Score = 34.7 bits (76), Expect = 0.087
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA----XXXXKVGPSNXXXDG 632
G P FN P SGG P P G GP + A PS G
Sbjct: 450 GPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 509
Query: 631 --PGYFXPAASKRSGVP 587
PG F P+ + SG+P
Sbjct: 510 GPPGPFDPSGAPPSGMP 526
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P F P SGG P P G GP + A GP N P
Sbjct: 180 GPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSG 239
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 240 GPPGPFDPSGAPPSGG 255
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P F+ P SGG P P G GP A GP N P
Sbjct: 390 GPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSG 449
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 450 GPPGPFNPSGAPPSGG 465
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P FN P SGG P P G GP A GP + P
Sbjct: 195 GPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 254
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 255 GPPGPFNPSGAPPSGG 270
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P FN P SGG P P G GP A GP + P
Sbjct: 225 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 284
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 285 GPPGPFDPSGAPPSGG 300
Score = 33.5 bits (73), Expect = 0.20
Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P FN P SGG P P G GP A GP + P
Sbjct: 315 GPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSG 374
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 375 GPPGPFDPSGAPPSGG 390
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P F+ P SGG P P G GP A GP + P
Sbjct: 165 GPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSG 224
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 225 GPPGPFNPSGAPPSGG 240
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/76 (28%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = -3
Query: 799 GXPTXFNRKAVPASGGRGKPXXXGTLXPXGXXXGPXEXXXA-XXXXKVGPSNXXXDGPGY 623
G P F+ SGG P P G GP + A GP N P
Sbjct: 300 GPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSG 359
Query: 622 FXPAASKRSGVPXQGG 575
P SG P GG
Sbjct: 360 GPPGPFDPSGAPPSGG 375
>U39666-1|AAA80412.2| 644|Caenorhabditis elegans Nematode astacin
protease protein33 protein.
Length = 644
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = +1
Query: 538 PSTAPPPM*RRXGHPXXGPPNVWKQPXQNSPGRRXXXXRAQP 663
P PPP R G P GPP W +P P RR R P
Sbjct: 37 PWGPPPPWHRNRGPPPFGPPPPWDRPP--PPWRRPPWHRRPP 76
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 530 RGSPYGATX*PA---RTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRS 360
R SP + PA SR + R R S+ +P+P RRR SP + P RRRRS
Sbjct: 412 RRSPSASKSPPAPKRAKSRSKSPPAPRRRRSPSQSKSPAPRRRR--SPSKSPQAPRRRRS 469
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 208 GTEAGRR----VRQAARPRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPP 348
GTE+G R RQA + H PP + PP+ A P P + VA PP
Sbjct: 255 GTESGARHGSISRQATLTFVSHKPPPVNPPQP----AVPPKPAKISVADPP 301
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +1
Query: 94 EKVPAKTTMAGQHLRQPEGEASAVAAHPVRENRADRLDGTEAGRRVRQAARPRLQHG 264
++ P+ ++ ++LR+P + + ++ P+ ++ +RLD TE R L+HG
Sbjct: 32 QQTPSSSSSKRKNLRKPSTDDTPSSSEPL--SKKNRLDSTETAEEDNTRRRRTLKHG 86
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
F52G2.2a protein.
Length = 1319
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 232 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 324
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1221 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1252
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical protein
F52G2.2b protein.
Length = 1129
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 232 RQAARPRLQHGPPR-LEPPRSNYSFAGAPFPP 324
+Q+ +PR P L PP S SF GAP PP
Sbjct: 1031 QQSYQPRYNGAPSGPLPPPSSQSSFNGAPAPP 1062
>AF000263-12|AAO21392.1| 838|Caenorhabditis elegans Hypothetical
protein T08B2.5f protein.
Length = 838
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -2
Query: 497 ARTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 363
AR +R RS R GRS + SPSRRR R + RRRR
Sbjct: 27 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 69
>AF000263-11|AAL77184.1| 866|Caenorhabditis elegans Hypothetical
protein T08B2.5c protein.
Length = 866
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -2
Query: 497 ARTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 363
AR +R RS R GRS + SPSRRR R + RRRR
Sbjct: 55 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 97
>AF000263-10|AAM22070.1| 163|Caenorhabditis elegans Hypothetical
protein T08B2.5d protein.
Length = 163
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -2
Query: 497 ARTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 363
AR +R RS R GRS + SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
>AF000263-9|AAO21391.2| 184|Caenorhabditis elegans Hypothetical
protein T08B2.5e protein.
Length = 184
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -2
Query: 497 ARTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 363
AR +R RS R GRS + SPSRRR R + RRRR
Sbjct: 134 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 176
>AF000263-8|AAK21461.1| 924|Caenorhabditis elegans Hypothetical
protein T08B2.5a protein.
Length = 924
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -2
Query: 497 ARTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 363
AR +R RS R GRS + SPSRRR R + RRRR
Sbjct: 113 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 155
>AF000263-7|AAK21463.1| 925|Caenorhabditis elegans Hypothetical
protein T08B2.5b protein.
Length = 925
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = -2
Query: 497 ARTSRXCDVRSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRR 363
AR +R RS R GRS + SPSRRR R + RRRR
Sbjct: 114 AREARRSRSRSRDRRGGRSR--SRSPSRRRTSRDRRDDRSSRRRR 156
>U88180-1|AAB42294.1| 203|Caenorhabditis elegans Hypothetical
protein T27A3.4 protein.
Length = 203
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 530 RGSPYGATX*PARTSRXCDVRS-ARSRSG-RSEDTAPSPSRRRACSPGRHPGTWRRR 366
RGS YG T +R+S+ RS R+RSG RS + S SRR + RH + + R
Sbjct: 116 RGSVYGRTG-RSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRSRHRSSSKAR 171
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/74 (31%), Positives = 25/74 (33%), Gaps = 3/74 (4%)
Frame = -3
Query: 766 PASGG---RGKPXXXGTLXPXGXXXGPXEXXXAXXXXKVGPSNXXXDGPGYFXPAASKRS 596
P GG RG P G P G GP + + GP GP P S
Sbjct: 193 PGRGGQRSRGLPGPSGRPGPPGPAGGPGQPGHSGGAGSPGPQG--PPGPS-GQPGHSGND 249
Query: 595 GVPXQGGRXASTWG 554
GVP G S G
Sbjct: 250 GVPGAPGNPGSPGG 263
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 146 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 280
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 27.9 bits (59), Expect = 10.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 146 KVRHPRSRPTQSARTGRTASTVRRPADGSAK-RRDHASSTDRRDWS 280
++ HP P +S+ ++++ RRP + S++ SS+ RRD+S
Sbjct: 304 RMSHPMGPPRRSSGAPPSSASNRRPVESSSRGPPPPPSSSSRRDYS 349
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Frame = -3
Query: 766 PASGG---RGKPXXXGTLXPXGXXXGPXEXXXAXXXXKVGPSNXXXDGPGYFXPAASKRS 596
P GG RG P G P G GP + + GP+ G P +
Sbjct: 190 PGQGGQRSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGPAGAPGAPGGPGQPGQDGQP 249
Query: 595 GVPXQGG 575
G P G
Sbjct: 250 GAPGNDG 256
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 27.9 bits (59), Expect = 10.0
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -2
Query: 476 DVRSARSRSGRSE---DTAPSPSRRRACSPGRHPGTWRRRRSLPITGGEATFVLGGKGAP 306
D RS + S E DT +RRR SP G + R P GG F GG
Sbjct: 101 DYRSGAAASSEEEPFSDTDYRVNRRRRLSPSHDDGDFDPRSKRPYYGGRGGF-RGGFRNG 159
Query: 305 AKE*FE 288
AK F+
Sbjct: 160 AKPRFQ 165
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 247 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVPGWRP 396
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 247 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVPGWRP 396
P + GPP PP G P PP PP+ G PG P
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 152 RHPRSRPTQSARTGRTASTVRR--PADGSAKRRDHASSTDRRDWSLRA 289
R RSR + +R R+ S+ R P S +R + S + +RD LRA
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLQLRA 151
>L10986-9|AAK93847.2| 808|Caenorhabditis elegans Spindle assembly
abnormal protein 4 protein.
Length = 808
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 232 RQAARPRLQ--HGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRL 375
++ +RP L+ G R PR+N + AGAP AS P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
>AJ539470-1|CAD62434.1| 808|Caenorhabditis elegans SAS-4 protein
protein.
Length = 808
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 232 RQAARPRLQ--HGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRL 375
++ +RP L+ G R PR+N + AGAP AS P I R L
Sbjct: 13 QKPSRPFLRKGQGTARFRMPRNNKTSAGAPPTSELSSASSPSINVPRFSL 62
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 337 ASPPVIGSERLRLQVPGWRPGE 402
A+P G RL L+ GWRPGE
Sbjct: 633 AAPATGGIGRLMLEKMGWRPGE 654
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 247 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGSERLRLQVPGWRP 396
P + GPP PP G P PP PP+ G PG P
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,168,420
Number of Sequences: 27780
Number of extensions: 333248
Number of successful extensions: 1193
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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