Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D14
(870 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 31 1.3
At4g36980.1 68417.m05240 expressed protein 30 2.3
At1g04120.1 68414.m00401 ABC transporter family protein Strong s... 30 2.3
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 29 3.1
At3g22070.1 68416.m02785 proline-rich family protein contains pr... 29 4.0
At5g60840.1 68418.m07632 expressed protein predicted protein, Dr... 29 5.3
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 29 5.3
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 29 5.3
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 29 5.3
At1g23060.2 68414.m02882 expressed protein Location of EST gb|T2... 28 7.1
At1g23060.1 68414.m02883 expressed protein Location of EST gb|T2... 28 7.1
At4g34260.1 68417.m04869 expressed protein 28 9.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 9.3
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 28 9.3
At1g25550.1 68414.m03172 myb family transcription factor contain... 28 9.3
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.7 bits (66), Expect = 1.3
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 12/138 (8%)
Frame = +1
Query: 319 PPRTKVASPPVIGSERLRLQVPGWRPGEQARRLEGDGAVSSDRPDRDRALRTSXCRDVLA 498
PPR KV+SPP S + P + A E DG R R+ R L+
Sbjct: 176 PPRQKVSSPPKPVSAAPKRDAP--KSDNAAADAEKDGGPRRPRERLSPRRRSPLPRRGLS 233
Query: 499 GQXVAPYGEPRIVPST-----APPPM*RRXGHPXXG------PPNVWKQPXQNSPGR-RX 642
+ +P R P + P RR P G PP ++ P + SP R R
Sbjct: 234 PRRRSPDSPHRRRPGSPIRRRGDTPPRRRPASPSRGRSPSSPPPRRYRSPPRGSPRRIRG 293
Query: 643 XXXRAQPSAXVXRXXXPP 696
R + + R PP
Sbjct: 294 SPVRRRSPLPLRRRSPPP 311
>At4g36980.1 68417.m05240 expressed protein
Length = 560
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -2
Query: 470 RSARSRSGRSEDTAPSPSRRRACSPGRHPGTWRRRRSLP 354
RS RSR S + SPSR + SP RH R LP
Sbjct: 508 RSRRSRRHSSRSRSRSPSRSLSRSPKRHADALHLIRGLP 546
>At1g04120.1 68414.m00401 ABC transporter family protein Strong
similarity to MRP-like ABC transporter gb|U92650 from A.
thaliana and canalicular multi-drug resistance protein
gb|L49379 from Rattus norvegicus
Length = 1514
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 71 VGSLPAILKRYRPKQPWPVN---ICVSRKVRHPRSRPT 175
VG PAI++ +RP WP V KVR+ + PT
Sbjct: 1246 VGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPT 1283
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 280 PPRSNYSFAGAPFPPRTKVASPPVIGSER 366
PPRS+ +A P PPRT S VI S R
Sbjct: 775 PPRSSSPYARRPSPPRTSGFSRSVIDSLR 803
>At3g22070.1 68416.m02785 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 178
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 247 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPP 348
P + PP PP + AP PP T + PP
Sbjct: 113 PSTPNPPPEFSPPPPDLDTTTAPPPPSTDIPIPP 146
>At5g60840.1 68418.m07632 expressed protein predicted protein,
Drosophila melanogaster
Length = 207
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +1
Query: 247 PRLQHGPPRLEPPRSNYSFAGAPFPPRTKVASPPVIGS 360
P+++H PP+ +P + P PP K+ ++ S
Sbjct: 15 PQVEHSPPQEKPGNAELFSPAPPSPPPPKITMMDIVNS 52
>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
contains Pfam profile: PF01909 nucleotidyltransferase
domain
Length = 839
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 110 KQPWPVNICVSRKVRHPRSRPTQSARTGRTASTVR 214
+ P PV +CV R R P P ++R R TVR
Sbjct: 338 RPPSPVVLCVPRAPRPPPPSPVSNSRARRGFPTVR 372
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 350 TGGEATFVLGGKGAPAKE*FERGGSNLGG 264
+GG+ ++ GG G A++ + GG N+GG
Sbjct: 193 SGGDGCYMCGGVGHFARDCRQNGGGNVGG 221
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 265 PPRLEPPRSNYSFAGAPFPP 324
PP ++PP N ++ G P PP
Sbjct: 216 PPHIQPPNMNQNYRGPPPPP 235
>At1g23060.2 68414.m02882 expressed protein Location of EST
gb|T22158 and gb|AA395675
Length = 306
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 137 VSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRAR 292
V RK + ++RP + R T A AK RD SST D SL R
Sbjct: 204 VVRKALNLKARPLPKSTQARPQHTSTGQAKAKAKARDDHSSTASCDRSLTNR 255
>At1g23060.1 68414.m02883 expressed protein Location of EST
gb|T22158 and gb|AA395675
Length = 367
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 137 VSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWSLRAR 292
V RK + ++RP + R T A AK RD SST D SL R
Sbjct: 265 VVRKALNLKARPLPKSTQARPQHTSTGQAKAKAKARDDHSSTASCDRSLTNR 316
>At4g34260.1 68417.m04869 expressed protein
Length = 843
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 602 TFGGPXXGWPXRLYMGGGAVDGTIRG 525
TFGGP W + +G G + TI G
Sbjct: 55 TFGGPSRNWTDAIPIGNGRLGATIWG 80
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 265 PPRLEPPRSNYSFAGAPFPPRTKVASPP 348
PP PP Y + P PP T V+SPP
Sbjct: 576 PPPHSPPPPIYPYLSPP-PPPTPVSSPP 602
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = -2
Query: 440 EDTAPSPSRRRACSPGRHPGTWRRRRSLPITGGEATFVLGGKGAPAKE*FERGGSNLGG 264
ED P +R S P R+ P+T EAT VL G G K GS + G
Sbjct: 503 EDHFPLLLKRLKKSKPVSPEELRKTGKCPLTPEEATLVLAGLGFKRKTYIYLAGSQIYG 561
>At1g25550.1 68414.m03172 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 170 PTQSARTGRTASTVRRPADGSAKRRDHASSTDRRDWS 280
PT + T TA TV + +++ H++ RR WS
Sbjct: 179 PTSTTTTSSTAETVGGGKEFEEQKQSHSNRKQRRCWS 215
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,762,840
Number of Sequences: 28952
Number of extensions: 303476
Number of successful extensions: 1229
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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