Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D13
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.6  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.6  

>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 659 PRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 483
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 482 QVNDESQASRLISR 441
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -1

Query: 659 PRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAP-SAYLTPSSLGMXKGVSPPYF 483
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 482 QVNDESQASRLISR 441
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 563  PLSSEAPSAYLTPSSLGMXKGVSPP 489
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,377
Number of Sequences: 27780
Number of extensions: 310957
Number of successful extensions: 1033
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)