Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D13
(776 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47170.1 68416.m05122 transferase family protein low similari... 35 0.069
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 35 0.069
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 32 0.37
At3g24550.1 68416.m03083 protein kinase family protein contains ... 32 0.37
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 30 2.0
At2g42460.1 68415.m05253 meprin and TRAF homology domain-contain... 29 2.6
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 29 3.4
At4g29990.1 68417.m04266 light repressible receptor protein kina... 29 3.4
At3g47590.1 68416.m05181 esterase/lipase/thioesterase family pro... 29 3.4
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein... 29 4.5
At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI ... 29 4.5
At5g49080.1 68418.m06074 proline-rich extensin-like family prote... 28 6.0
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 28 7.9
At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family pr... 28 7.9
At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family pr... 28 7.9
>At3g47170.1 68416.m05122 transferase family protein low similarity
to 10-deacetylbaccatin III-10-O-acetyl transferase Taxus
cuspidata GI:6746554; contains Pfam profile PF02458
transferase family
Length = 468
Score = 34.7 bits (76), Expect = 0.069
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 469 NHKLRALLVVIPRILRSPP-PTHPLIEDVVMATNQAIIDYK-VKIADNNLVTHKELALKV 296
N K LV + + SP PT ++ +++ T++ I K + I D NL KE +K+
Sbjct: 222 NDKNNPKLVDVEKDCSSPDTPTEDMVREILNITSEDITKLKNIIIEDENLTNEKEKNMKI 281
Query: 295 SSIIGTRVYVFDPSC 251
+++ YV+ C
Sbjct: 282 TTVEVLAAYVWRARC 296
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 34.7 bits (76), Expect = 0.069
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = -1
Query: 677 STRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 498
+T +S P + +P TP S S P ++AP KP + S P Y TPS K
Sbjct: 18 ATVTSYP-YSSPQTPSYNSPSYEHKGP---KYAPHPKPYVKSSPPPQYYTPSPKVNYKSP 73
Query: 497 SPPY 486
PPY
Sbjct: 74 PPPY 77
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = -1
Query: 677 STRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 498
+T +S P + +P TP S S P ++AP KP + S P Y TPS K
Sbjct: 24 ATVTSYP-YSSPHTPAYDSPSYEHKGP---KYAPHPKPYVYSSPPPPYYTPSPKVNYKSP 79
Query: 497 SPPY 486
PPY
Sbjct: 80 PPPY 83
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 32.3 bits (70), Expect = 0.37
Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -1
Query: 716 PXASSTXPXXXXTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAP--GLKPPLSSEAP 543
P ASS P T+T SS P +P+T + +PL P +P L PPL +P
Sbjct: 29 PAASSPPP----TTTPSSPPP--SPSTNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSP 82
Query: 542 SAYLTPS 522
SA +TPS
Sbjct: 83 SAPITPS 89
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/86 (26%), Positives = 31/86 (36%)
Frame = -1
Query: 716 PXASSTXPXXXXTSTRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSA 537
P + S+ P SS+P +P P + +PL P +PP SS +
Sbjct: 56 PLSPSSSPEEDSPLPPSSSPEEDSPLAPSSSPEVDSPLAPSSSPEVDSPQPPSSSPEADS 115
Query: 536 YLTPSSLGMXKGVSPPYFQVNDESQA 459
L PSS P ES A
Sbjct: 116 PLPPSSSPEANSPQSPASSPKPESLA 141
>At2g42460.1 68415.m05253 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 441
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 442 VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKEL 308
V P++L PL E+ + N+ II +VK+A+ +T KE+
Sbjct: 273 VEPKMLSFKDYASPLQEEGFLENNKLIIRVEVKVAEEGYLTGKEM 317
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 716 PXASSTXPXXXXTS-TRSSNPRFHTPTTPDL--TSISINPLTPX*KEFAPGLKPPLSSEA 546
P S T P TS + S ++PT+P TS S +P +P +P P + +
Sbjct: 1676 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYS 1735
Query: 545 PSAYLTPSS 519
PS +PS+
Sbjct: 1736 PSIAYSPSN 1744
>At4g29990.1 68417.m04266 light repressible receptor protein kinase
identical to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 876
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 289 IIGTRVYVFDPSCYFSTPPFDTVLYDNI-RTVLKDNKTALLSASIQASLPSSEIYRQLVD 113
+I TR + + TP FD + N+ +V+ N+TA+++ I + PS I+ LVD
Sbjct: 104 LIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMTKEIIYTPPSDHIHVCLVD 163
>At3g47590.1 68416.m05181 esterase/lipase/thioesterase family
protein low similarity to cinnamoyl ester hydrolase CinI
[Butyrivibrio fibrisolvens] GI:1622732; contains
Interpro entry IPR000379
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 271 YVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 116
+V S Y+ T PF T + N+R +K+N+ + A PS I Q +
Sbjct: 10 FVPQDSPYYKTSPFPTSSFFNVRFPIKNNQISCNKAKNLRMDPSKGIQEQRI 61
>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
5-epi-aristolochene synthase, Nicotiana tabacum,
PATX:G505588
Length = 604
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 134 LGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEGRS*KVARGIEDVDSGAY 286
L G S+ + K +F LK+RP +V I+GR G ED S Y
Sbjct: 464 LAGIFMSMGKMATKEAFEWLKSRPKLVQYLSIKGRLMNDLMGYEDDMSRGY 514
>At1g61520.1 68414.m06931 chlorophyll A-B binding protein / LHCI
type III (LHCA3.1) nearly identical to PSI type III
chlorophyll a/b-binding protein GI:430947; contains Pfam
profile: PF00504 chlorophyll A-B binding protein;
similar to PSI type III chlorophyll a/b-binding protein
GI:430947 from [Arabidopsis thaliana]
Length = 273
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 484 K*GGETPLXMPSDEGVRYADGASDDNGGFNPGANSFXYGVRGLME 618
K G PL S + + Y DG+ + GF+P S G G +E
Sbjct: 48 KQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIE 92
>At5g49080.1 68418.m06074 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 609
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -1
Query: 677 STRSSNPRFHTPTTPDLTSISINPLTPX*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 498
+T +S P + +P TP S +P ++ P KP + + P Y +PS K
Sbjct: 18 ATVTSYP-YSSPQTPQYNFPSHQHKSP---KYTPHSKPYIYNSPPPPYYSPSPKVNYKSP 73
Query: 497 SPPY 486
PPY
Sbjct: 74 PPPY 77
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Frame = -1
Query: 731 IXGVXPXASSTXPXXXXTSTRSSNPRFHTPTTPDLTSISINPLTPX*--KEFAPGLKPPL 558
+ P S+ ST SS P TP+TP +P +P P PP
Sbjct: 118 VLAAAPSPSTPSSPPSTPSTPSSPPS--TPSTPSSPPSPPSPPSPSLPPSSLPPSASPPT 175
Query: 557 SSEAPSAYLTPSSLGMXKGVSP 492
+ S LTP + +SP
Sbjct: 176 NGTPDSETLTPPPAPLPPSLSP 197
>At1g06170.2 68414.m00649 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 547 LHQRISPPRHWA----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 383
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 382 MATNQAIIDY 353
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
>At1g06170.1 68414.m00648 basic helix-loop-helix (bHLH) family
protein contains Pfam profile:PF00010 helix-loop-helix
DNA-binding domain
Length = 420
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 547 LHQRISPPRHWA----WXKGFRPLIFK*MMNHKLRALLVVIPRILRSPPP-THPLIEDVV 383
+HQ + P + W G++ + NH LL ++ S PP +P I+D++
Sbjct: 91 MHQTLQDPSYAQQSNHWDNGYQDFV-NLGPNHTTPDLLSLLQLPRSSLPPFANPSIQDII 149
Query: 382 MATNQAIIDY 353
M T+ ++ Y
Sbjct: 150 MTTSSSVAAY 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,200
Number of Sequences: 28952
Number of extensions: 312931
Number of successful extensions: 1110
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -