Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D12
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30590.1 68415.m03727 WRKY family transcription factor              29   4.1  
At4g13960.1 68417.m02159 F-box family protein contains F-box dom...    28   9.6  

>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 45  PLEGYSRAAATCSSSTWCHCAGGRR 119
           PL+G    +  C SS+ CHCA  R+
Sbjct: 268 PLKGDEHGSLKCGSSSRCHCAKKRK 292


>At4g13960.1 68417.m02159 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 434

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 723 PTXTRLPXICVNGAELLRHFGKSR*F 800
           P   R+P +C   AE++ H+GKS  F
Sbjct: 392 PPKLRVPQVCEFIAEMMEHYGKSSSF 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,150,798
Number of Sequences: 28952
Number of extensions: 392616
Number of successful extensions: 831
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)