Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D11
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30590.1 68415.m03727 WRKY family transcription factor              30   2.3  
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    28   7.1  

>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 24  LGTRKLGPLEGYSRAAATCSSSTWCHCAGGRR 119
           L +++  PL+G    +  C SS+ CHCA  R+
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRK 292


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
           ubiquitin-transferase family protein /
           armadillo/beta-catenin-like repeat-containing protein
           similar to SP|Q14669 Thyroid receptor interacting
           protein 12 (TRIP12) {Homo sapiens}; contains Pfam
           profiles PF00632: HECT-domain (ubiquitin-transferase),
           PF00514: Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 247 LVPEVPVKRRLLNPQPFRQFACRQTVYADLXSTGPGXARI 366
           +V E+P  +R  N Q FR      +V A    T PG   +
Sbjct: 11  VVEELPADKRACNSQDFRPSTSGSSVQAQANDTNPGHENV 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,189
Number of Sequences: 28952
Number of extensions: 396477
Number of successful extensions: 888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)