Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D09
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/59 (55%), Positives = 45/59 (76%)
 Frame = -3

Query: 300 RCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVLELDYKPQVVHE 124
           R  GLSRTRDGLL+  VDLNL RQ++D+  + MT RL+MY  SLS+ ++ +Y+P +VHE
Sbjct: 38  RYHGLSRTRDGLLVTEVDLNLCRQVKDKWGFQMTSRLEMYAKSLSEAVQRNYEPPIVHE 96


>SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = -3

Query: 318 CGPDG----VRCPGLSRTRDGL--LIAAVDLNLNRQIRDRRCYYMTQRLDMYVNSLSKVL 157
           C PDG    VRC  + ++R  +  L A +  + N  +R RRC  +  +L+   NS+S++L
Sbjct: 183 CRPDGYIPLVRCSVVLQSRSCIQTLRATLQNDWNAILRKRRCNVVESKLNHGANSISRLL 242


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 162 LC*DCSRTC-PGVGSCNNNVCL*SVC 236
           +C DCS TC PGV  C   +C+  VC
Sbjct: 123 ICSDCSMTCPPGVERC-EQMCVSGVC 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,970,323
Number of Sequences: 59808
Number of extensions: 476585
Number of successful extensions: 1246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)