Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D06
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                44   2e-04
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.34 
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_33997| Best HMM Match : Astacin (HMM E-Value=0)                     28   9.8  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 30/73 (41%), Positives = 38/73 (52%)
 Frame = -2

Query: 326 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 147
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 146 KAILELRRRKNLK 108
             +L + RR+  K
Sbjct: 277 AEMLTVERRRAAK 289



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/34 (55%), Positives = 21/34 (61%)
 Frame = -2

Query: 515 QGLTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGR 414
           QGL +AFRN+PGVE           L PGGHLGR
Sbjct: 212 QGLRQAFRNLPGVELQHVDRLNLLKLCPGGHLGR 245


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -2

Query: 353 TPSEQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 207
           TP+EQ   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 278 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 174
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -3

Query: 415 VSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQR-WPTLTSHVFSSLMRSGRSSVLPT 239
           + SS L+ H+ G+    GHGR   +      C SQ  WP + S       + G +  LPT
Sbjct: 36  IYSSVLAAHNRGVIFDVGHGRGSFSWTVAELCASQDFWPDVISTDLHVDCQKGPAYDLPT 95

Query: 238 NA*SVLH 218
               +LH
Sbjct: 96  VMTKMLH 102


>SB_33997| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 507

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 355 RHHRNKRRTSTCPSQRWPTLT 293
           +HHR KR  ++  +Q+WP  T
Sbjct: 223 KHHRGKRAAASSDNQKWPRNT 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,816,315
Number of Sequences: 59808
Number of extensions: 378687
Number of successful extensions: 1179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)