Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D06
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   137   9e-33
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   131   6e-31
At5g52500.1 68418.m06513 expressed protein strong similarity to ...    28   6.1  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  137 bits (331), Expect = 9e-33
 Identities = 67/134 (50%), Positives = 87/134 (64%)
 Frame = -2

Query: 509 LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKKN 330
           + +AFRN+PGVE           LAPGGHLGRFVIWT+SAF +L+ ++GS++ PSE+KK 
Sbjct: 223 IVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 282

Query: 329 FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK 150
           + LP+ KM N DL R++ SDEI+ V+    K   RA  K NPL N   MLKLNPYA   K
Sbjct: 283 YVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAK 342

Query: 149 RKAILELRRRKNLK 108
           R ++L   +R   K
Sbjct: 343 RMSLLAEAQRVKAK 356


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  131 bits (316), Expect = 6e-31
 Identities = 64/134 (47%), Positives = 84/134 (62%)
 Frame = -2

Query: 509 LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSEQKKN 330
           + +AFRN+PGVE           LAPGGHLGRFVIWT+SAF +L+ ++GS++ PSE+KK 
Sbjct: 224 IVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKG 283

Query: 329 FNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLK 150
           + LP+ KM N DL R++ SDE++ V+        RA  K NPL N   M KLNPYA   K
Sbjct: 284 YVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAK 343

Query: 149 RKAILELRRRKNLK 108
           R ++L    R   K
Sbjct: 344 RMSLLAEASRVKAK 357


>At5g52500.1 68418.m06513 expressed protein strong similarity to
           unknown protein (emb|CAB68146.1)
          Length = 363

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 51  IAGFRLDSFSPLFSASARXLQVLPSAQL*DSFPLQHGRVRIEFQHGLVIGERVQF 215
           I GF +    P  S S    QV  S +    +P+  GRVR  F+H +++  +  F
Sbjct: 210 IVGFDVTELDPENSLSGFMDQVPLSLRRWACYPMLLGRVRRSFKHVMLVDAKTSF 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,025
Number of Sequences: 28952
Number of extensions: 269553
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)