Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D05
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   3.0  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   7.0  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   7.0  

>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 218 RPPQQYRRWPPATSRICEPPRSRS 289
           RPP    + PP+  RI  P RSR+
Sbjct: 399 RPPSSINQRPPSNLRILAPSRSRA 422


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 67  RMAVKLAQVAAGHGGGATCAWAISLCETPPTVCLMLVIESLNSV 198
           +MA +L  V+    GG       +LC   PTVCL  ++  +N V
Sbjct: 315 QMAKELCGVSVLRSGGTL---ETALCRQFPTVCLGKILVQINKV 355


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 438 CREHGDGVHLFADHLVNFLVQVPQHVVYLRL 530
           C   G G   F+ ++ N L+Q  +H+ YL L
Sbjct: 337 CGPKGSGKSSFSRYITNRLLQQYRHIAYLDL 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,315
Number of Sequences: 5004
Number of extensions: 36866
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)