Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D05
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0290 - 2335365-2335901 34 0.11
11_04_0367 - 16840732-16843428,16844425-16844760 31 1.0
05_03_0645 + 16529635-16529794,16530188-16530312,16531100-165311... 30 2.4
05_01_0360 + 2814139-2814627,2815203-2815334,2815480-2815583,281... 30 2.4
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473... 29 3.2
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 29 3.2
06_03_1028 - 27004229-27004566,27005554-27005772,27006254-270063... 29 5.5
03_04_0152 + 17740643-17741407 29 5.5
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216 29 5.5
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 29 5.5
12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606... 28 7.3
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 28 7.3
11_01_0355 + 2679561-2680985,2681183-2682295 28 9.7
01_05_0678 + 24226013-24226264 28 9.7
>08_01_0290 - 2335365-2335901
Length = 178
Score = 34.3 bits (75), Expect = 0.11
Identities = 27/77 (35%), Positives = 30/77 (38%)
Frame = -3
Query: 354 PRLGRAGGQQSAHDQHHSRAQGLRDRGGSQIRLVAGGQRRYCCGGRHQPSVPDRVEGLYH 175
P RA Q H +RA RGG RL AGG R+ GGR R L H
Sbjct: 107 PGAARAAAQACVHKYRDARAAADGRRGGPPERLRAGGARQGRSGGRR------RRRRLRH 160
Query: 174 QHQADCRRRLAEANGPG 124
+ A RR L G
Sbjct: 161 RAAAGVRRELGVVQDGG 177
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 614 DEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDL 498
DE D D + +F+ QR Q+F G +HD++ DL
Sbjct: 477 DERNDGDKNGNRYFDELVQRSFLQLFSGSCIMHDLIHDL 515
>05_03_0645 +
16529635-16529794,16530188-16530312,16531100-16531173,
16531961-16532006,16532638-16532730,16534429-16535886
Length = 651
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 221 PPQQYRRWPPATSRICEPPRSRSP*ARLWC*S*ADCWPPARPSRGGRSAYSASVEGS 391
P + W A + + PR+ + AR W A P P RG A S+S +G+
Sbjct: 267 PSAMSQMWRAAVAAVGSSPRASAASARSWPEMAAPSSAPGDPGRGPPVALSSSAQGA 323
>05_01_0360 +
2814139-2814627,2815203-2815334,2815480-2815583,
2816180-2816292,2818409-2818506,2818636-2818815,
2818893-2819114,2819270-2819404,2819489-2819771,
2819858-2819931,2820164-2820384,2820463-2820550,
2820651-2820744,2820827-2821015,2821369-2821400,
2821542-2821621,2821718-2821807,2821911-2821980,
2822240-2822285,2822370-2822428,2822588-2822753,
2822929-2823107,2823186-2823392,2823529-2823633,
2823701-2823703
Length = 1152
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 587 FDDWFESDGQRELRQIFQGQAQIHDVLR 504
FDDWF+ G+ + ++ Q Q+H VLR
Sbjct: 470 FDDWFQISGENDQHEVVQ---QLHKVLR 494
>07_01_0633 -
4735298-4735485,4736083-4736114,4736203-4736297,
4736414-4736487,4736682-4736817,4736902-4736965,
4737101-4737166,4737265-4737446,4737824-4737948,
4738031-4738169,4738250-4738369,4738675-4738746,
4738900-4738935,4739633-4739749,4739821-4739953,
4740053-4740156,4740243-4740370,4740880-4741010,
4741561-4741757,4743906-4744583
Length = 938
Score = 29.5 bits (63), Expect = 3.2
Identities = 28/90 (31%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Frame = -3
Query: 360 RPPRLGRAGGQQSAHDQHHSRAQ---GLRDRGGSQIRLVAGGQRRYCCGGRHQPSVPDRV 190
R P GR GG+ H Q + Q G D GG AGG GG D
Sbjct: 25 RGPAGGRGGGRGGGHPQQQQQQQPGYGRGDGGGRGPAPAAGGVVGRGTGGGGGGGRGDGG 84
Query: 189 EGLYHQHQADCRRRLAEANGPGAGSPAPVS 100
G R A A P A +P PV+
Sbjct: 85 RGRGRGGGGGDGVRPAMAAAPAASTPGPVA 114
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +3
Query: 180 RVPQLCQELRVDAA-----PRSSTAAGRQQRVGFASHLDHEALELGYGVDHE 320
RVP +C E R+ A R S AG++ AS + H +E+G V HE
Sbjct: 832 RVPLICPEERLAAQVDREIARCSGMAGKEVDELIASDVQHSGVEIGVDVLHE 883
>06_03_1028 -
27004229-27004566,27005554-27005772,27006254-27006390,
27007172-27007509
Length = 343
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 258 LVAGGQRRYC--CGGRHQPSVPDRVEGLYHQHQADCRRRLAEAN 133
+VAG RR+C C H PS D Q + CRRRL++ N
Sbjct: 99 VVAGQDRRFCQQCSRFHAPSEFD-------QEKRSCRRRLSDHN 135
>03_04_0152 + 17740643-17741407
Length = 254
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 52 MAATSRMAVKLAQVAAGHGGGATCAWA 132
MA +SR+A+ LA VAA GGA W+
Sbjct: 1 MAMSSRLALCLAVVAACAAGGAVADWS 27
>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
Length = 750
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 204 VPDRVEGLYHQHQADCRRRLAEANGPGAGSPAPVSCRDLR*FHRHPAGGRHAISAHVHIC 25
VPD V+ +A C+ +A G P P + L+ + RHP + HV C
Sbjct: 520 VPDEVK------KAICQTLMANKTELTQGKPLPRTASMLQRYGRHPTAIETIVVWHVATC 573
Query: 24 SVQK 13
+QK
Sbjct: 574 HLQK 577
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 587 FDDWFESDGQRELRQIFQGQAQIHDVLR 504
FD+WF+ G+ + +++ Q Q+H VLR
Sbjct: 416 FDEWFQISGENDQQEVVQ---QLHKVLR 440
>12_01_0991 - 10057736-10058249,10058412-10059241,10059266-10060633,
10061785-10062327,10066274-10066498,10066590-10066640
Length = 1176
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 31 MNMSANCMAATSRMAVKLAQV-AAGHGGGATCAWAISLCETPPTVCLMLVIESLNSVRN 204
+N+SA MA TS +V L +V A G G +W + E P T+ + +ESL+ N
Sbjct: 980 VNLSA--MARTSGYSVLLDEVIATGQGAILNFSWNLINGEIPETIGQLKQLESLDLSHN 1036
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 28.3 bits (60), Expect = 7.3
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 5/88 (5%)
Frame = -3
Query: 357 PPRLGRAGGQQSAHDQHHSRAQGLRDRGGSQIRLVAGGQRRYCCGGRHQPSVPDR--VEG 184
PPRLGR G H +A S+ A C GG HQP P +E
Sbjct: 27 PPRLGRRRGGDDQQPPHPPKA-------SSEALPCAASPPARCRGGDHQPPHPPEAALEA 79
Query: 183 LYHQHQADCRRR---LAEANGPGAGSPA 109
L RRR L ++ P A S A
Sbjct: 80 LRGAASPPARRRGGDLHPSHPPEAASEA 107
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 225 GGRHQPSVPDRVEGLYHQHQADCRRRLAEANGPGAGSPAPV 103
GG H P++ + + + + QA RR E P P+PV
Sbjct: 101 GGGHHPALSNALVAAFKRAQAHQRRGSVEGQPPPQPPPSPV 141
>01_05_0678 + 24226013-24226264
Length = 83
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 276 GGSQIRLVAGGQRRYCCGGRHQPSVP 199
G + + + AGG RR C GGR PS P
Sbjct: 39 GAAAVPIGAGGTRR-CGGGRRLPSAP 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,072
Number of Sequences: 37544
Number of extensions: 387195
Number of successful extensions: 1584
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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