Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D05
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 30   2.4  
SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 30   2.4  
SB_50029| Best HMM Match : TP2 (HMM E-Value=0.15)                      30   2.4  
SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                30   2.4  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)           28   7.5  
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 535

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 629 RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 465
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 436 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 492


>SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 406

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 629 RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 465
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 338 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 394


>SB_50029| Best HMM Match : TP2 (HMM E-Value=0.15)
          Length = 303

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 629 RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 465
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 235 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 291


>SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 320

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
 Frame = -1

Query: 629 RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 465
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 252 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 308


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 578 WFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMN 459
           WF  DG R     +  +A +H ++RD   +  E I K ++
Sbjct: 835 WFPYDGTRSHSLAYDRRASLHRIVRDREMEAFECIEKSLS 874


>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 218 RPPQQYRRWPPATSRICEPPRSR 286
           +PP+  RR PP  S +  PPRS+
Sbjct: 162 QPPRNLRRKPPPRSPLKRPPRSK 184


>SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)
          Length = 285

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 563 GQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 465
           G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 5   GRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 40


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = -1

Query: 629 RKEHPDEVRDKDGEFDDWFES--DGQRELRQIFQGQAQIHDVLRD--LNKKVDEVIGKQ 465
           R +  D++ D    F  W +    G+RELR   Q  AQ+H +++D     ++D ++ K+
Sbjct: 249 RNDDTDKILDA---FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDDPDELRIDSILNKK 304


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 629 RKEHPDEVRDKDGEFDDWFESDGQRELRQIFQGQAQIHDVLRDLNKKVD 483
           R++  D  RD+D +  D    DG+RE  +    + +  D+L   NK VD
Sbjct: 352 REQRRDRFRDRDEKGSDLERRDGRREAMKASNRENRTADLLE--NKTVD 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,611,607
Number of Sequences: 59808
Number of extensions: 349981
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)