Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D04
(795 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 218 2e-55
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 217 2e-55
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 180 5e-44
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 156 5e-37
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 129 9e-29
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 127 4e-28
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 109 1e-22
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 106 6e-22
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 85 2e-15
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 77 7e-13
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 75 2e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 75 3e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 71 3e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 69 1e-10
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 69 1e-10
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 68 3e-10
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 67 4e-10
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 62 2e-08
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 62 2e-08
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 62 2e-08
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 61 3e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 60 6e-08
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 54 3e-06
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 52 2e-05
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 43 0.008
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 36 1.5
UniRef50_Q9P0F5 Cluster: HSPC081; n=1; Homo sapiens|Rep: HSPC081... 35 2.0
UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding pro... 35 2.7
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 6.2
UniRef50_UPI0000660517 Cluster: Kinesin-like protein KIF1A (Axon... 33 8.3
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 218 bits (532), Expect = 2e-55
Identities = 104/167 (62%), Positives = 122/167 (73%), Gaps = 1/167 (0%)
Frame = -3
Query: 763 KXAHIMXSNLTVYHRGQS-EMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRW 587
K AHIM L + Q + PV SVF+Q E+ID I TSRW
Sbjct: 176 KKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRW 235
Query: 586 HTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKD 407
HTKKLPRKTHKGLRKVACIGAWHP+RV ++ARAGQKGYHHRTE+NKKI+RIG+G H +D
Sbjct: 236 HTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMED 295
Query: 406 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 266
GK++KNNAST YD++ KSITP+GGFPHYGEVNNDFVM +G + GT K
Sbjct: 296 GKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKK 342
Score = 91.9 bits (218), Expect = 2e-17
Identities = 44/66 (66%), Positives = 49/66 (74%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
KGC G KKR+ITLRKSL VH R A+E I LKFIDT+SKFGHGRFQT +K AFMG K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
Query: 111 KDRIRE 94
K +E
Sbjct: 394 KHLEKE 399
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 217 bits (531), Expect = 2e-55
Identities = 100/137 (72%), Positives = 113/137 (82%)
Frame = -3
Query: 676 PVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFT 497
PV+ VF QDEMID I TSRWHTKKLPRKTH+GLRKVACIGAWHP+RV+F+
Sbjct: 206 PVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFS 265
Query: 496 VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGE 317
VARAGQKGYHHRTE+NKKIY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF HYGE
Sbjct: 266 VARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGE 325
Query: 316 VNNDFVMXQGLLHGT*K 266
V NDFVM +G + GT K
Sbjct: 326 VTNDFVMLKGCVVGTKK 342
Score = 106 bits (255), Expect = 6e-22
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
KGC +G KKR++TLRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
Query: 111 KDRIREE 91
KDRI +E
Sbjct: 394 KDRIAKE 400
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 180 bits (437), Expect = 5e-44
Identities = 84/130 (64%), Positives = 99/130 (76%)
Frame = -3
Query: 664 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 485
V A +MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 484 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 305
GQKG+HHRT +N KIYRIG+ ++G KNN STE+DL++K+ITPMGGFP YG VN D
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTITPMGGFPRYGIVNQD 278
Query: 304 FVMXQGLLHG 275
++M +G + G
Sbjct: 279 YIMLRGAVLG 288
Score = 96.3 bits (229), Expect = 8e-19
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
+G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK
Sbjct: 283 RGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 342
Query: 111 KDRIRE 94
+D + E
Sbjct: 343 RDFLAE 348
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 156 bits (379), Expect = 5e-37
Identities = 79/166 (47%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Frame = -3
Query: 769 GTKXAHIMXSNLTVYHRGQS-EMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTS 593
G K AH+ + Q E+ + + +DSVF Q E D
Sbjct: 228 GVKKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVK 287
Query: 592 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 413
RW LPRKTH+GLRKVACIGAWHPSRV +TVARAGQ GYHHRT +NKKIY++G+ +
Sbjct: 288 RWGVACLPRKTHRGLRKVACIGAWHPSRVMYTVARAGQHGYHHRTHLNKKIYQLGRAVSM 347
Query: 412 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 275
+ N A+T YDL+ K+ITPMGGF YG V ND+VM +G + G
Sbjct: 348 E-----PNQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLKGSVAG 388
Score = 86.6 bits (205), Expect = 6e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
KG GP++R+ITLR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LK
Sbjct: 383 KGSVAGPRRRVITLRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLK 442
Query: 111 KDRIREE 91
KDRIR E
Sbjct: 443 KDRIRRE 449
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 129 bits (311), Expect = 9e-29
Identities = 65/123 (52%), Positives = 82/123 (66%)
Frame = -3
Query: 655 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 476
QDE+ID I T + P + +G K+ C+GAWHP+RV+F+VA+ GQK
Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251
Query: 475 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 296
GYHH + NKKI +IGQG KDGK+IKNNA TEY LS+KSI +GGF HYGEV NDF+
Sbjct: 252 GYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIR 310
Query: 295 XQG 287
+G
Sbjct: 311 LKG 313
Score = 58.4 bits (135), Expect = 2e-07
Identities = 33/67 (49%), Positives = 42/67 (62%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
KGC + KK + T+ K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LK
Sbjct: 312 KGCAVRTKKHL-TICKYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLK 370
Query: 111 KDRIREE 91
K+ EE
Sbjct: 371 KECTAEE 377
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 127 bits (306), Expect = 4e-28
Identities = 62/136 (45%), Positives = 89/136 (65%)
Frame = -3
Query: 673 VDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTV 494
++S+F ++++ID I SRW +LPRKTH+GLRKVACIG W PSRV++T+
Sbjct: 189 INSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRVAWTI 248
Query: 493 ARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEV 314
+RAGQKGYH RT NKKIY+IG +++ N+ S D KS+ MGGF +G +
Sbjct: 249 SRAGQKGYHKRTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFKKFGFI 302
Query: 313 NNDFVMXQGLLHGT*K 266
NND+++ +G + G+ K
Sbjct: 303 NNDYLIIKGSMTGSSK 318
Score = 55.2 bits (127), Expect = 2e-06
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 124
KG G KR I LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 109 bits (261), Expect = 1e-22
Identities = 68/166 (40%), Positives = 92/166 (55%)
Frame = -3
Query: 763 KXAHIMXSNLTVYHRGQSEMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWH 584
K AH+ S + + + + + PV+ +F + I +S W+
Sbjct: 133 KKAHLTESQVNRGPVAKLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWY 191
Query: 583 TKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDG 404
TKK+P KTH+ + ACI W +VA A QKG HH T +NKKIY+IGQG K+G
Sbjct: 192 TKKVPWKTHQEFHEAACI--WD----GLSVAWARQKGCHHCT-INKKIYKIGQGYLIKNG 244
Query: 403 KVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 266
K+IKNNAST+Y KSI+P+GG H G+V NDFVM + L GT K
Sbjct: 245 KIIKNNASTDY---TKSISPLGGCIHCGKVTNDFVMLKDCLVGTKK 287
Score = 81.0 bits (191), Expect = 3e-14
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
K C +G KKR+++L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LK
Sbjct: 279 KDCLVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLK 338
Query: 111 KD 106
KD
Sbjct: 339 KD 340
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 106 bits (255), Expect = 6e-22
Identities = 59/141 (41%), Positives = 78/141 (55%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSR 509
G+ V V + E++D I RW K K KG RKV IG WHP+R
Sbjct: 204 GKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIGPWHPAR 263
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TV AGQ G+HHRTE+NK++ IG+ +GK +K + +TE + ITP GGFP
Sbjct: 264 VMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFP 312
Query: 328 HYGEVNNDFVMXQGLLHGT*K 266
HYG V +DF+M G + G K
Sbjct: 313 HYGIVRSDFMMIAGSVPGAIK 333
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 85.0 bits (201), Expect = 2e-15
Identities = 41/63 (65%), Positives = 50/63 (79%)
Frame = -1
Query: 279 MGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRI 100
+G KK+++TL KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 88 VGTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQT 147
Query: 99 REE 91
+E
Sbjct: 148 AKE 150
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 76.6 bits (180), Expect = 7e-13
Identities = 33/47 (70%), Positives = 40/47 (85%)
Frame = -3
Query: 406 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 266
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M +G + GT K
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKK 47
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/29 (72%), Positives = 24/29 (82%)
Frame = -1
Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEK 205
KGC +G KKR++TLRKSL V TKR ALEK
Sbjct: 39 KGCVVGTKKRVLTLRKSLLVQTKRRALEK 67
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 74.9 bits (176), Expect = 2e-12
Identities = 57/166 (34%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Frame = -3
Query: 769 GTKXAHIMXSNLTVYHRG-QSEMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTS 593
G+K IM LT G Q + GE ++ VF ID I
Sbjct: 158 GSKSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVR 217
Query: 592 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 413
R+ K L K K R++ +G + V T+ +AGQ GYH RTE NK+I RI
Sbjct: 218 RFGVKLLSHKNSKRRRQIGNMGDFGTGYVRKTIRQAGQTGYHQRTEYNKRILRI------ 271
Query: 412 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 275
A E E ITP GGF HYGEV N +++ QG L G
Sbjct: 272 ---------AGEE----ESQITPAGGFLHYGEVKNHYMIIQGSLPG 304
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.5 bits (175), Expect = 3e-12
Identities = 47/140 (33%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK-KLPRKTHKGL-RKVACIGAWHP 515
G+ + VF + E++D I RW K + + KG+ R V IG W P
Sbjct: 181 GKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQP 240
Query: 514 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGG 335
V ++V GQ GYH RTE NK+I +IG NN ITP GG
Sbjct: 241 KMVMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD--------EITPKGG 280
Query: 334 FPHYGEVNNDFVMXQGLLHG 275
F HYG + N++V+ +G + G
Sbjct: 281 FLHYGVIRNNYVVLKGSVQG 300
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 70.9 bits (166), Expect = 3e-11
Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Frame = -3
Query: 709 EMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRK--VA 536
E + G+ + VFA E++D RW RK + +K V
Sbjct: 177 EFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRHVG 236
Query: 535 CIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEK 356
+G W+P R+ + V + GQ GYH RTE NK+I ++G D +E+
Sbjct: 237 NLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMG-------------------DKAEE 277
Query: 355 SITPMGGFPHYGEVNNDFVMXQGLLHG 275
ITP GGF HYG + ND++M +G + G
Sbjct: 278 -ITPAGGFLHYGLIRNDYIMLKGSIPG 303
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 69.3 bits (162), Expect = 1e-10
Identities = 42/138 (30%), Positives = 64/138 (46%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSR 509
G+ +D +F +D RW+ KK K+ K +R+V +G P
Sbjct: 182 GKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPISPQS 241
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TV RAGQ G+H R E +K+I +G +T+ D + I P GGF
Sbjct: 242 VMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NTDDD--KLKINPDGGFK 284
Query: 328 HYGEVNNDFVMXQGLLHG 275
H+G V DF++ +G + G
Sbjct: 285 HFGLVKGDFIVLKGSVPG 302
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 68.9 bits (161), Expect = 1e-10
Identities = 34/97 (35%), Positives = 51/97 (52%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSR 509
G+ ++ VF + + +D I R+H + K+ KG+RKV IG+ P R
Sbjct: 174 GKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGR 233
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 398
+ TV GQ GYH RTE NK I +IG+ ++ + G V
Sbjct: 234 IFPTVPMPGQMGYHRRTEYNKLIIKIGEPLNVEGGWV 270
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 67.7 bits (158), Expect = 3e-10
Identities = 49/151 (32%), Positives = 65/151 (43%), Gaps = 2/151 (1%)
Frame = -3
Query: 721 RGQSEMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGL-- 548
R + E E VF + E++D RW RKT +
Sbjct: 176 RERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQKG 235
Query: 547 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 368
R + IG PSRV +TV AGQ GYH RTE NK+I +IG+ DG
Sbjct: 236 RHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGE-----DG------------ 278
Query: 367 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 275
+ +TP GGF +YG V D++M G + G
Sbjct: 279 ---EEVTPRGGFVNYGVVRGDYIMIHGTVPG 306
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 67.3 bits (157), Expect = 4e-10
Identities = 44/142 (30%), Positives = 65/142 (45%)
Frame = -3
Query: 700 QRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAW 521
+R GE +D V+ + +D + R+ K L K K R++ +G +
Sbjct: 203 ERLGGE-IGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSKRRRQIGNMGDF 261
Query: 520 HPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 341
V T+ +AGQ GYH RTE+NK+I RI + E +TP
Sbjct: 262 GTGYVRKTIRQAGQMGYHKRTELNKRILRIS-------------------NPGESDVTPA 302
Query: 340 GGFPHYGEVNNDFVMXQGLLHG 275
GGF HYGEV N +++ +G L G
Sbjct: 303 GGFLHYGEVTNPYMVLEGSLPG 324
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 62.1 bits (144), Expect = 2e-08
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Frame = -3
Query: 664 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRK-THKGLRK-VACIGAWHPSRVSFTVA 491
VF E D RW +K K +G R+ + +G W+PSRV TV
Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250
Query: 490 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 311
+ GQ GYH RTE+NK++ I G TP GGFP+YGEV+
Sbjct: 251 QQGQTGYHQRTELNKRLIDINDG---------------------DEPTPDGGFPNYGEVD 289
Query: 310 NDFVMXQGLLHG 275
+ + +G + G
Sbjct: 290 GPYTLVKGSVPG 301
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 61.7 bits (143), Expect = 2e-08
Identities = 39/106 (36%), Positives = 51/106 (48%)
Frame = -3
Query: 592 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 413
R+ K LPRK K R + +G WHP V TV +AGQ GY RT N ++ + +G
Sbjct: 209 RFGVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKG--- 265
Query: 412 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 275
+A T I GGF HYG V ND+V+ G + G
Sbjct: 266 -------EDADT--------INVRGGFLHYGLVKNDYVLLFGSVPG 296
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 61.7 bits (143), Expect = 2e-08
Identities = 49/144 (34%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHP 515
G V+ VF + +++D I RW K+LPR K KG R+ IGA
Sbjct: 188 GNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR---IGARSH 244
Query: 514 SRVSF-TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMG 338
R +F +AGQ G+H RTE NK+I I +K +TP G
Sbjct: 245 GRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK--------------------VTPAG 284
Query: 337 GFPHYGEVNNDFVMXQGLLHGT*K 266
GF YG V + FVM G + GT K
Sbjct: 285 GFLRYGVVRSTFVMLSGSIPGTPK 308
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 61.3 bits (142), Expect = 3e-08
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 2/143 (1%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHP 515
G+ + VF + + ID I R+ +++PR K KG ++ +G P
Sbjct: 179 GKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPRWHKHRKGHSRIGSVGPQKP 238
Query: 514 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGG 335
+ + F GQ G+H RTE NK+I ++G D + S K I P GG
Sbjct: 239 A-IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE------------SLKEINPPGG 279
Query: 334 FPHYGEVNNDFVMXQGLLHGT*K 266
+PHYG V + F++ +G + G K
Sbjct: 280 WPHYGLVRSQFIIVEGSVPGAVK 302
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 60.1 bits (139), Expect = 6e-08
Identities = 34/107 (31%), Positives = 54/107 (50%)
Frame = -3
Query: 592 RWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHK 413
R K+ K+ K +R++ +G P V +TV RAGQ G+H R E NK+I +G
Sbjct: 212 RMGAKRKQHKSRKTVRELGSLGPISPQNVMYTVPRAGQMGFHQRIEYNKRIMAVGSA--- 268
Query: 412 KDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT 272
G+ + +I P GG+ H+G V D+++ +G + GT
Sbjct: 269 --GE-------------DDAINPSGGYKHFGMVKGDYIVLKGSVPGT 300
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 54.4 bits (125), Expect = 3e-06
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Frame = -3
Query: 721 RGQSEMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGL 548
+ Q + G+ + VF + ++ID + R+ +LPR K KG
Sbjct: 189 KSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGS 248
Query: 547 RKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYD 368
RK+ G S+T + GQ G+H RTE NK+I +IG
Sbjct: 249 RKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIGD------------------- 287
Query: 367 LSEKSITPMGGFPHYGEVNNDFVMXQGLLHGT*K 266
K I P GGF YG V N +V+ +G + G+ K
Sbjct: 288 -EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKK 320
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 52.0 bits (119), Expect = 2e-05
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Frame = -3
Query: 709 EMGQRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVA 536
+ ++ G VD VF + + ID I R+ K+LPR K KG RK
Sbjct: 235 DYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPRWHKHRKGSRK-- 292
Query: 535 CIGAWHPSRVSFT-VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 359
IG+ P + + + GQ G+H RTE NK+I +IG ++
Sbjct: 293 -IGSRSPGFGTMSETPQPGQMGFHRRTEYNKRIIKIG--------------------ING 331
Query: 358 KSITPMGGFPHYGEVNNDFVMXQGLLHG 275
+TP GGF YG V ++M G + G
Sbjct: 332 WEVTPKGGFLGYGIVYGPYIMLHGSIIG 359
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 464 VMITFLTSTSYSERHPRRMPSSNAGNFPKXXXXXXXXXXXXPTRSDTFVSFALGDTNAVN 643
+++T LTS+ + MPS+N N + P+ DT + GD+N +N
Sbjct: 1 MVVTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDIN 60
Query: 644 HFILGKHRIDRXRF 685
HFIL ++R++R F
Sbjct: 61 HFILFENRVNRNFF 74
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 43.2 bits (97), Expect = 0.008
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 2/140 (1%)
Frame = -3
Query: 688 GEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKVACIGAWHP 515
G+ V+ V + +D I R+ K+LP+ K KG R+V +W
Sbjct: 205 GQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGVKELPKWHKHRKGSRRVGA-RSWGK 263
Query: 514 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGG 335
S+ V + GQ GYH RT+ NK++ I K I GG
Sbjct: 264 GTSSY-VPQPGQMGYHRRTDYNKRVLMISDDPSK--------------------INVEGG 302
Query: 334 FPHYGEVNNDFVMXQGLLHG 275
+ HYG V + +V+ +G + G
Sbjct: 303 WLHYGLVKSKYVVLKGSVFG 322
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 35.5 bits (78), Expect = 1.5
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -2
Query: 239 CVCIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 117
C C + G +R T +SLTP PS M SR R HSW H
Sbjct: 63 CWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_Q9P0F5 Cluster: HSPC081; n=1; Homo sapiens|Rep: HSPC081 -
Homo sapiens (Human)
Length = 92
Score = 35.1 bits (77), Expect = 2.0
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 651 SWANTESTGIGSPDVLWPISLCP 719
SW N+ S G+G+P +LWP LCP
Sbjct: 26 SWPNSPSLGVGAPIILWP-GLCP 47
>UniRef50_Q2BFU2 Cluster: RTX toxins and related Ca2+-binding
protein; n=2; Bacillus sp. NRRL B-14911|Rep: RTX toxins
and related Ca2+-binding protein - Bacillus sp. NRRL
B-14911
Length = 1415
Score = 34.7 bits (76), Expect = 2.7
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 406 GKVIKNNASTEYD-LSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 275
G VI+ N D LS K++T MG EV NDF M ++HG
Sbjct: 299 GAVIEGNVKVSGDFLSLKNLTIMGDLEIAKEVENDFYMEDAIVHG 343
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 33.5 bits (73), Expect = 6.2
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +2
Query: 290 LXHHKVVVYFTIMGETSHRCNGFLRQIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVM 469
L H ++ YF + +SH +II + +++NNFA +F+ L D V+F+ +
Sbjct: 463 LFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPIN 519
Query: 470 ITFLTST 490
I + S+
Sbjct: 520 ILSIYSS 526
>UniRef50_UPI0000660517 Cluster: Kinesin-like protein KIF1A (Axonal
transporter of synaptic vesicles) (Microtubule-based
motor KIF1A) (UNC-104-and KIF1A-related protein)
(hUNC-104).; n=1; Takifugu rubripes|Rep: Kinesin-like
protein KIF1A (Axonal transporter of synaptic vesicles)
(Microtubule-based motor KIF1A) (UNC-104-and
KIF1A-related protein) (hUNC-104). - Takifugu rubripes
Length = 1606
Score = 33.1 bits (72), Expect = 8.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 754 HIMXSNLTVYHRGQSEMGQRTSGEPXPVDSVFAQDEM 644
H+ N + R + + GQ G P PVD FAQ E+
Sbjct: 579 HVFRFNHPLQARAERDKGQHADGSPEPVDWTFAQREL 615
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,710,234
Number of Sequences: 1657284
Number of extensions: 15685394
Number of successful extensions: 36364
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 35216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36352
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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