Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_D04
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   171   6e-43
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   167   1e-41
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   167   1e-41
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.6  
At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21) ...    29   4.7  
At5g11270.1 68418.m01316 expressed protein                             28   6.2  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    28   8.2  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  171 bits (415), Expect = 6e-43
 Identities = 80/134 (59%), Positives = 97/134 (72%)
 Frame = -3

Query: 676 PVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFT 497
           PVD++F +DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+T
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYT 266

Query: 496 VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGE 317
           VARAGQ GYHHRTEMNKK+YR+G     K G+   ++A TEYD +EK ITPMGGFPHYG 
Sbjct: 267 VARAGQNGYHHRTEMNKKVYRVG-----KVGQE-THSAMTEYDRTEKDITPMGGFPHYGI 320

Query: 316 VNNDFVMXQGLLHG 275
           V  D++M +G   G
Sbjct: 321 VKEDYLMIKGCCVG 334



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 37/61 (60%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -1

Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMG-TL 115
           KGCC+GPKKR++TLR++L   T R A+E+I LKFID +S  GHGRFQT  +KA F G T+
Sbjct: 329 KGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGRTI 388

Query: 114 K 112
           K
Sbjct: 389 K 389


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  167 bits (405), Expect = 1e-41
 Identities = 78/134 (58%), Positives = 96/134 (71%)
 Frame = -3

Query: 676 PVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFT 497
           P+++VF +DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+T
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYT 266

Query: 496 VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGE 317
           VARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD +EK +TPMGGFPHYG 
Sbjct: 267 VARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGI 320

Query: 316 VNNDFVMXQGLLHG 275
           V +D++M +G   G
Sbjct: 321 VKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 111 K 109
           K
Sbjct: 389 K 389


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  167 bits (405), Expect = 1e-41
 Identities = 78/134 (58%), Positives = 96/134 (71%)
 Frame = -3

Query: 676 PVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFT 497
           P+++VF +DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+T
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYT 266

Query: 496 VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGE 317
           VARAGQ GYHHRTE+NKKIYR+G     K G    + A TEYD +EK +TPMGGFPHYG 
Sbjct: 267 VARAGQNGYHHRTELNKKIYRLG-----KVG-TEAHTAMTEYDRTEKDVTPMGGFPHYGI 320

Query: 316 VNNDFVMXQGLLHG 275
           V +D++M +G   G
Sbjct: 321 VKDDYLMIKGCCVG 334



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 38/61 (62%), Positives = 46/61 (75%)
 Frame = -1

Query: 291 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 112
           KGCC+GPKKR++TLR+SL   T R ALE+I LKFIDT+S FGHGRFQT  +K  F   + 
Sbjct: 329 KGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRVT 388

Query: 111 K 109
           K
Sbjct: 389 K 389


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 472 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 320
           Y     MNK  Y    G+ K+D    +++N A   +DL +  I+  G   H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314


>At5g46740.1 68418.m05758 ubiquitin-specific protease 21 (UBP21)
           identical to ubiquitin-specific protease 21 GI:11993482
           [Arabidopsis thaliana]
          Length = 732

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 648 SSWANTESTGIGSPDVLWPISLC 716
           SS A  +S G+  PDV WP S C
Sbjct: 508 SSKACNDSVGVSIPDVKWPDSCC 530


>At5g11270.1 68418.m01316 expressed protein 
          Length = 354

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 700 QRTSGEPXPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTH-KGLRKV 539
           + +S +P PV+S+ A+D +++               RW  +K  +K H + L KV
Sbjct: 250 ENSSPDPSPVESLSAEDVVVEPKEKVKDEAVHVMQQRWSAQKRVKKAHIETLEKV 304


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 203 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 108
           S+S+S +P PSS+   SR   T L S  H+RR
Sbjct: 17  SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,193,767
Number of Sequences: 28952
Number of extensions: 358988
Number of successful extensions: 856
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)