Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_D03
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 149 3e-36
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 83 3e-16
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 81 8e-16
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 44 2e-04
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 44 2e-04
01_06_0888 + 32738275-32739567 31 1.5
09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135 29 5.9
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 149 bits (360), Expect = 3e-36
Identities = 68/139 (48%), Positives = 94/139 (67%), Gaps = 2/139 (1%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPT 410
PPDGEFELM+YR T+ ++LPFRV+P ++E+GRT+ME+ V +KS F + + VK+P
Sbjct: 272 PPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPV 331
Query: 409 PLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLET-DTKKKWTRPP 233
P T+ GKAKY AS +++VWKI++ G E +SAE+EL+ T KK W RPP
Sbjct: 332 PKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPP 391
Query: 232 ISMGFEVP-FAPSGFKVRY 179
I M F+VP F SG +VR+
Sbjct: 392 IQMEFQVPMFTASGLRVRF 410
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = -2
Query: 698 SDPARSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 588
S PA+SGK + +DD FHQCV L++F +E ++SF+P
Sbjct: 237 SRPAKSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVP 272
Score = 34.7 bits (76), Expect = 0.089
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -1
Query: 189 RSAXLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 82
R LKV+E S ++ ++WVRYI R+G YE RC
Sbjct: 407 RVRFLKVWEK----SGYNTVEWVRYITRAGSYEIRC 438
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 83.0 bits (196), Expect = 3e-16
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPT 410
PPDG F+LM YR + + V V + R+++++ V +S FK +E+++P
Sbjct: 236 PPDGSFDLMTYRLSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPV 295
Query: 409 PLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRP 236
P +++ + G A Y +A+VWKIK G KE AE L + ++ +
Sbjct: 296 PEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKA 355
Query: 235 PISMGFEVP-FAPSGFKVRY 179
PI + FE+P F SG +VRY
Sbjct: 356 PIRVKFEIPYFTVSGIQVRY 375
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = -2
Query: 662 IDDCQFHQCVKLSKFETEHSISFIP 588
+DD +FHQCV+L++FE + +ISFIP
Sbjct: 212 LDDIKFHQCVRLARFENDRTISFIP 236
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 81.4 bits (192), Expect = 8e-16
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPT 410
PPDG F+LM YR + + V + + R+++E+ V +S FK +E+++P
Sbjct: 261 PPDGSFDLMTYRLSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPV 320
Query: 409 PLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL--LETDTKKKWTRP 236
P + + + G A Y +A+VWK+K G K+ AE L + + +
Sbjct: 321 PSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKA 380
Query: 235 PISMGFEVP-FAPSGFKVRY 179
PI + FE+P F SG +VRY
Sbjct: 381 PIRVKFEIPYFTVSGIQVRY 400
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = -2
Query: 689 ARSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 588
A GK + +DD +FHQCV+L++FE + +ISFIP
Sbjct: 229 ATKGK-AIDLDDIKFHQCVRLARFENDRTISFIP 261
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 43.6 bits (98), Expect = 2e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKM 485
PPDGEF +M YR T++ PFRV L+ E G +++
Sbjct: 280 PPDGEFAVMNYRITQEFKPPFRVTALIEEAGPSRI 314
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 719 GISGNTDSD-PARSGKPVVVIDDCQFHQCVKLSKFETEHSISFIP 588
G +G++ D + SG V++DDC FH+ V L F+ + ++ IP
Sbjct: 236 GRTGSSSYDYRSSSGGGAVILDDCNFHESVHLDSFDIDRTLHLIP 280
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 43.6 bits (98), Expect = 2e-04
Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Frame = -3
Query: 589 PPDGEFELMRYRTTKDISLPFRVIP-LVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIP 413
PPDG+FELM YR K + P V P L + G ++ V V +K++ P I V+
Sbjct: 260 PPDGQFELMSYRVKKLKTTPIYVKPQLTSDSGNCRVNVMVGIKND--PGKTIDSITVQFR 317
Query: 412 TPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPP 233
P + L G A + W I ++ K LS + L E T T P
Sbjct: 318 LPPLIASADLTANYGTVDILADQTCF-WTIGQIPKDKAPSLSGNLRLEEGLTHLH-TFPT 375
Query: 232 ISMGFEV-PFAPSGFKV 185
+ F++ A SG ++
Sbjct: 376 FEVKFKIMGVALSGLQI 392
Score = 31.1 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 665 VIDDCQFHQCVKLSKFETEHSISFIP 588
+I+D +FH CV+ +E+ +SF+P
Sbjct: 235 IINDVRFHPCVRFRPWESNQILSFVP 260
>01_06_0888 + 32738275-32739567
Length = 430
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 335 DSVLRGFILRFPLQANQLHPAGVQRSWNLHFDLL 436
D+V+R R P N++H AGV R W H + L
Sbjct: 12 DAVVREIANRLPCVYNRVHLAGVCRPWREHLERL 45
>09_02_0139 - 4875234-4876210,4877532-4877932,4878056-4878135
Length = 485
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 220 TPWRWAGASTSSWCRSRGAQSR 285
TP A STS WCRSRG R
Sbjct: 377 TPISSAQQSTSIWCRSRGGNRR 398
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,255,291
Number of Sequences: 37544
Number of extensions: 521149
Number of successful extensions: 1514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -