Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C23
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    28   9.8  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    28   9.8  

>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
           protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 5   FFFFYNGXXVXCXKCAFDN-DLRPS*HGTSIRVSWLQY-GSLTL*KDRGRTW 154
           FF+FYNG       C  D  DL          + WL + G   L + + +TW
Sbjct: 120 FFYFYNGELCRAVVCLLDYIDLSDDTLAKEAALRWLMFLGETELIEKKLKTW 171


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
           1 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +2

Query: 5   FFFFYNGXXVXCXKCAFDN-DLRPS*HGTSIRVSWLQY-GSLTL*KDRGRTW 154
           FF+FYNG       C  D  DL          + WL + G   L + + +TW
Sbjct: 120 FFYFYNGELCRAVVCLLDYIDLSDDTLAKEAALRWLMFLGETELIEKKLKTW 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,129
Number of Sequences: 27780
Number of extensions: 111404
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)