Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C20
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0658 - 20366559-20367562,20367745-20367937 30 2.9
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 30 2.9
07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333... 29 5.0
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 5.0
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333... 29 5.0
03_05_0958 - 29200048-29200731 29 5.0
02_05_0040 + 25341418-25341810 29 5.0
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 5.0
12_02_0954 - 24757417-24758214 29 6.6
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.6
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 28 8.7
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822... 28 8.7
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214... 28 8.7
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = +2
Query: 170 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADLVQQV 349
V+ G+ H + M L +HG V + L+P L FRQ + DL V
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVV 310
Query: 350 QGG 358
G
Sbjct: 311 HPG 313
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 599 RPRLESGGWIGPGVFYGGQNSVDG----VSRRSDGSL-NELCLYRPPTVHAYRPFA 751
+P L SGGWIG G GG +++ G V + G L LC HA R FA
Sbjct: 332 KPALTSGGWIGGG---GGDSTMGGGMRVVVTGATGYLGGRLCAALAAAGHAVRAFA 384
>07_03_1058 +
23631819-23631943,23632032-23632101,23632196-23633368,
23633469-23634266
Length = 721
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 630 VPVSS-MEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTAHLRQWG 761
VPVS TA+ SPG T TS PYT TAH + G
Sbjct: 529 VPVSGGAAAATAYTPSPGCTTAVPTSQPLSTSSPYTDTAHATRDG 573
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 536 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 426
Y+TSL + G ++ G+PR C AG D L W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320
>06_03_0108 -
16732215-16732572,16732623-16732741,16733344-16733393,
16734619-16734820
Length = 242
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 605 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 694
R SGG GP V YGG+ GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168
>03_05_0958 - 29200048-29200731
Length = 227
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 581 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 691
+L+ R R +SGG G G G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 115 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 213
RRAAP CG S+ S +RR AP S P
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 635 GVFYGGQNSVDGVSRRSDGSLNELCLYRPPTVHAYRPFASMGRSCYDIXES 787
G Y ++ VDG S R+ N P VH Y G++ D+ ++
Sbjct: 719 GSVYDSESEVDGSSDRNAADSNTKDNQEDPLVHVYDASVDQGQTARDVEDN 769
>12_02_0954 - 24757417-24758214
Length = 265
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 59 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 190
T +RPRP+ A A+ A+ A+G Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 599 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 501
AG + +SH + P L +FR ++ L+K GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = -3
Query: 550 YLGDTIEQVCTKKQAGTGPEFLEHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPN 371
YLG K TG EF+ H I +V+ I + + +++F+ K+ S ++
Sbjct: 643 YLGPNCGAQFHAKHLSTGGEFVTHVRILLVVLGIPF---LSSNLVFLMLKLLSSCLIRLR 699
Query: 370 TVIRAALDLLNE 335
+ + AL L NE
Sbjct: 700 SSLARALQLWNE 711
>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
22582341-22582477,22582567-22582683,22583277-22583440,
22583542-22583756,22583838-22584004,22584206-22584559,
22584647-22584795,22584907-22585030,22585132-22585371,
22585723-22586140,22586297-22586920,22586999-22587183,
22587302-22587412,22587583-22587789,22587869-22587967,
22588063-22588159,22588296-22588384,22588495-22588548,
22588671-22588793,22588872-22588940,22589020-22589089,
22589202-22589260,22589367-22589570,22590032-22590060,
22590375-22590433,22590513-22590634,22591637-22591830,
22591974-22592088
Length = 1680
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -3
Query: 484 EHCVISIVLARILYH**VGGHIMFISDKVSSMTKLQPNTVIRAALDLLNEVG 329
+ V+SI L +++ VGGH SD + + ++ + L+LLN VG
Sbjct: 1286 DQTVVSIALGALVHLIEVGGHQFSDSDWETLLKSIRDASYTTQPLELLNSVG 1337
>06_01_0293 -
2139421-2139600,2139716-2140471,2140830-2140935,
2140999-2141249,2141342-2141443,2141557-2141876,
2142350-2142546,2143668-2143786,2143876-2143997,
2144877-2145081
Length = 785
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 818 WEFVWHQNQRDFPKCRNNSAPLTQMGGRRVRWEV 717
+EF+ + + D + RNN+ PLT R+ WEV
Sbjct: 501 YEFMENGSLDDMLQRRNNTPPLTWFDRFRIAWEV 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,393,354
Number of Sequences: 37544
Number of extensions: 567661
Number of successful extensions: 1479
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -