Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C20
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    30   2.4  
At2g30590.1 68415.m03727 WRKY family transcription factor              30   2.4  
At3g24130.1 68416.m03030 pectinesterase family protein contains ...    29   5.5  

>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 324 STPTSFNRSRAARITVFGCNFVMLDTLSLINI 419
           S P  FN +RA  +TVF C+   L +   +N+
Sbjct: 492 SLPLQFNTTRAITVTVFSCDKTALPSTITVNV 523


>At2g30590.1 68415.m03727 WRKY family transcription factor
          Length = 380

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 25  LGTRKLGPLEGYSRAAATCSSSTWCHCAGGRR 120
           L +++  PL+G    +  C SS+ CHCA  R+
Sbjct: 261 LHSKRKCPLKGDEHGSLKCGSSSRCHCAKKRK 292


>At3g24130.1 68416.m03030 pectinesterase family protein contains
           Pfam profile: PF01095 Pectinesterase
          Length = 335

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 818 WEFVWHQNQRDFPK--CRNNSAPLTQMGGRRVRWEVYISRARLVN 690
           W FV H+NQ  F +  C  + A +    GRRV+W   +S + + N
Sbjct: 275 WNFVGHENQLVFAEHGCFGSGANI----GRRVKWVKKLSESAIQN 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,344
Number of Sequences: 28952
Number of extensions: 396399
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)