Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C19
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 29   5.7  
SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                 29   5.7  
SB_50029| Best HMM Match : TP2 (HMM E-Value=0.15)                      29   5.7  
SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)                29   5.7  
SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)           28   7.5  

>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 718 KSAPDEQQKLSQEXPGVPEETGXAEGG 638
           K  PDEQ K S E PG+P   G    G
Sbjct: 387 KPIPDEQFKASSEYPGLPARNGRLGNG 413


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 581 WFESDGQRELRQIFQGQAQIHDVLRDLNKKVDEVIGKQMN 462
           WF  DG R     +  +A +H ++RD   +  E I K ++
Sbjct: 835 WFPYDGTRSHSLAYDRRASLHRIVRDREMEAFECIEKSLS 874


>SB_6270| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -2

Query: 590 FDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 468
           F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 447 FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 492


>SB_4357| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 406

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -2

Query: 590 FDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 468
           F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 349 FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 394


>SB_50029| Best HMM Match : TP2 (HMM E-Value=0.15)
          Length = 303

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -2

Query: 590 FDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 468
           F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 246 FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 291


>SB_48876| Best HMM Match : Vicilin_N (HMM E-Value=0.11)
          Length = 320

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = -2

Query: 590 FDDWFES--DGQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 468
           F  W +    G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 263 FLQWLQGIDGGRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 308


>SB_18204| Best HMM Match : Phage_integr_N (HMM E-Value=0.24)
          Length = 285

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -2

Query: 566 GQRELRQIFQGQAQIHDVLRDLNK---KVDEVIGKQ 468
           G+RELR   Q  AQ+H +++D++    ++D ++ K+
Sbjct: 5   GRRELRTAKQYVAQVHAIIKDVDPDELRIDSILNKK 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,112,885
Number of Sequences: 59808
Number of extensions: 326710
Number of successful extensions: 1522
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1521
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)