Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_C17
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 30 1.6
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi... 30 2.1
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put... 30 2.1
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 28 8.3
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 28 8.3
At3g12690.3 68416.m01586 protein kinase, putative similar to vir... 28 8.3
At3g12690.2 68416.m01585 protein kinase, putative similar to vir... 28 8.3
At3g12690.1 68416.m01584 protein kinase, putative similar to vir... 28 8.3
At1g60960.1 68414.m06862 metal transporter, putative (IRT3) iden... 28 8.3
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 211 QTQPTEFLAGSSQWVAFPXPVVDSAKHG 128
+T+P +AGS +W+ P P S +HG
Sbjct: 396 RTEPYIMIAGSGRWIPPPLPATRSPEHG 423
>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = +2
Query: 173 LRRSGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 271
L SG+++ G CLR NL+ + +VA+ D + ++GD
Sbjct: 143 LLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178
>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
putative similar to cathepsin B-like cysteine proteinase
[Nicotiana rustica] GI:609175; contains Pfam profile
PF00112: Papain family cysteine protease
Length = 362
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 668 TMQTFYRNKSYQPPRKLQFYGVPPLLHDVTLTLRK 564
T+ F R +P K +F GVP + HD++L L K
Sbjct: 74 TVAEFKRLLGVKPTPKTEFLGVPIVSHDISLKLPK 108
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3
Query: 366 CGQ-NGKQSTSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLAT---KGSTSKLTLRHSP 199
CG NG + SP T HL S G F PF P+ T G +++H
Sbjct: 204 CGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQPTPAPLTTSLAGWMPNPSVQHPT 263
Query: 198 LSFSP 184
+S P
Sbjct: 264 VSAGP 268
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3
Query: 366 CGQ-NGKQSTSPKTRHLGSS*STNGAFRYFKHRSPFSSNPSLAT---KGSTSKLTLRHSP 199
CG NG + SP T HL S G F PF P+ T G +++H
Sbjct: 204 CGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQPTPAPLTTSLAGWMPNPSVQHPT 263
Query: 198 LSFSP 184
+S P
Sbjct: 264 VSAGP 268
>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
KH+ P S P +T+G+ S+ L+H+ S D L+
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91
>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
KH+ P S P +T+G+ S+ L+H+ S D L+
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91
>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
symptom modulation protein [Lycopersicon esculentum]
gi|7672777|gb|AAF66637
Length = 577
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 279 KHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLS 172
KH+ P S P +T+G+ S+ L+H+ S D L+
Sbjct: 56 KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91
>At1g60960.1 68414.m06862 metal transporter, putative (IRT3)
identical to putative metal transporter IRT3
[Arabidopsis thaliana] gi|17385796|gb|AAL38438; similar
to iron-regulated transporter 1 [Lycopersicon
esculentum] gi|9716481|gb|AAF97509; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 425
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 570 EEANREHLSSTHKHALHRKNLHPP 499
E++ H+ H HA H ++ HPP
Sbjct: 204 EDSGGIHIVGIHAHAAHHRHSHPP 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,359,694
Number of Sequences: 28952
Number of extensions: 340201
Number of successful extensions: 973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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