Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C14
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.63 
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)                   29   3.4  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   29   3.4  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 29   4.4  
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          29   5.9  
SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                29   5.9  
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGL-KPPLSSEAPSAYLTPSSLGMXKG 503
           ST S+     TP+TP   S    P TP      PG    P +  AP   +TPS+L     
Sbjct: 133 STPSTPSTPSTPSTPSTPSTPSTPSTPS-TPITPGTPSTPSTPSAPGTPITPSTLSTPST 191

Query: 502 VSPP 491
            S P
Sbjct: 192 PSTP 195



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 500
           ST S+    +TP+TP   S+   P TP           P +   PS   TPS+    K  
Sbjct: 268 STPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTP 327

Query: 499 SPP 491
           S P
Sbjct: 328 STP 330



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 500
           ST S+    +TP+TP   S    P+TP      P    P +  AP   +TPS+L      
Sbjct: 689 STPSTPSMPNTPSTPSTPSTPSTPITP----GTP--STPSTPSAPGTPITPSTLSTPSTP 742

Query: 499 SPP 491
           S P
Sbjct: 743 STP 745



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = -2

Query: 679  STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 500
            ST S+    +TP+TP   S+   P TP           P +   PS   TPS+    K  
Sbjct: 818  STPSTPCTPNTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPKTP 877

Query: 499  SPP 491
            S P
Sbjct: 878  STP 880



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 500
           ST S+     TP+TP   S    P TP           P +   PS   TPS+  M    
Sbjct: 641 STPSTPSTRSTPSTPSTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPSTPSTPSMPNTP 700

Query: 499 SPP 491
           S P
Sbjct: 701 STP 703



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 500
           ST S+     TP+TP   S    P TP           P +   PSA  TPS+       
Sbjct: 82  STPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTPSTPSTPSTPSTPSAPSTPSTPSTPSTP 141

Query: 499 SPP 491
           S P
Sbjct: 142 STP 144



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 21/63 (33%), Positives = 25/63 (39%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGV 500
           ST S+    HTP+TP   S    P TP      P    P +   PS   TPS+       
Sbjct: 444 STPSTPSLTHTPSTPSTPSTPSTPSTPS-TPSTP--STPSTPSTPSTPSTPSTSSTPSTP 500

Query: 499 SPP 491
           S P
Sbjct: 501 STP 503



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 679 STXSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSL 518
           ST S+     TP+TP   S    P TP           P +   PS   TPS+L
Sbjct: 519 STPSAPGTPSTPSTPSTPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPSTPSTL 572


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 586  FAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISR 443
            FA     P SS++PSA  +P+S       SP  F  + E +   +IS+
Sbjct: 1096 FATTTMSPTSSQSPSAVTSPTSPRSPSNPSPASFGFHSEDEPVTMISK 1143


>SB_56721| Best HMM Match : DUF755 (HMM E-Value=0.52)
          Length = 516

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -2

Query: 646 PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDES 467
           P TP   S S  P++P  +   P  +P     +PS  LT +       ++P + +V++E 
Sbjct: 51  PKTPSEPSDSPGPMSPEPEIMTPTPEPSPKHRSPSPKLTKTPTPPSWSLTPLHDEVDEEE 110

Query: 466 QAS 458
           + S
Sbjct: 111 EGS 113


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -3

Query: 237  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SLI 58
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S     ++  + 
Sbjct: 2292 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKIVFEPHNIDNASPATVSRNGMVY 2349

Query: 57   LHSFGL 40
            + S GL
Sbjct: 2350 MSSSGL 2355


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 237  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 91
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 1384 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPTCKVVFEPHNIDNAS 1430


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 357 YKVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLK---DN 187
           + + + DN L T   L +K+    G   +VFD         FDT+    +R   +   DN
Sbjct: 313 HSLTMIDNEL-TGDPLDIKMFEATG---WVFDEPGE-DNKKFDTIAPSTVRPKTREMTDN 367

Query: 186 KTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVK 73
           +  L    I+    SS++ R  V  R + SD   VYVK
Sbjct: 368 QVPLEVGIIRQFPFSSDVQRMTVITRILGSDHMDVYVK 405


>SB_23156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -2

Query: 640 TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQA 461
           TP  +S SI+  +P  +     L PP  +  P + LTP S    + ++P          +
Sbjct: 153 TPAGSSSSISLASPGMRSSLGSLTPPSRTSTPRSRLTPRSRSRSRTITPSTPSTTSSRAS 212

Query: 460 SRLISRHSTHT 428
           SR  +R    T
Sbjct: 213 SRGSARGGAKT 223


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -2

Query: 670 SSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 527
           S+ PR H PTTP  T  +  P T            P +S+APSA  TP
Sbjct: 269 SAIPRGHLPTTPSTTPQATPPST------TSQTTAPTASQAPSAGETP 310


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 237  PFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDS 91
            P D +  +N+ +VL DNKT  L+   +  +P S   + + +P ++ + S
Sbjct: 2286 PVDAIWIENLNSVLDDNKTLTLANGDR--IPMSPQCKVVFEPHNIDNAS 2332


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 649 TPTTPDLTSISINPLTPY 596
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 649  TPTTPDLTSISINPLTPY*KEFAPGL---KPPLSSEAPSAYLTPSSLGMXKGVSPP 491
            TPTTP  T+ +  P  P   E  P L    PP+ +  P+   TP++       +PP
Sbjct: 897  TPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPP 952


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,377,408
Number of Sequences: 59808
Number of extensions: 453619
Number of successful extensions: 1291
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)