Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C10
         (834 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.023
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_23805| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=7.1)            29   4.6  
SB_15430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_28616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -1

Query: 357 GAALLVCYVALRFLGTNTVSAYHRARVYGLKIL----TEPFADVQDSEQG 220
           G ++++ Y+ LR LG N VS Y RAR+  L I+     E  A  + SEQG
Sbjct: 54  GMSVIMEYLCLRLLGFNIVSVYRRARITALTIIGRKPEERTASPEPSEQG 103


>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 288 RARVYGLKILTEPFADVQDSEQGQLSTISRTVTVEIAPKD 169
           R R  G +I+ +   D  DSE    +T+SRTV   IAP D
Sbjct: 239 RFRRTGTRIIEQLVQDAMDSESADTATLSRTV---IAPHD 275


>SB_23805| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=7.1)
          Length = 126

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 23/86 (26%), Positives = 38/86 (44%)
 Frame = +1

Query: 19  TSHHHCFISLSKLSCYVICDGQRYVARYLKIAVRYFLVLFRFALERLVEDVFRCDLDGHR 198
           TS+      L  +S Y++        R  ++ +R  +VL       L++DV +C LD H 
Sbjct: 36  TSYFGKSSQLGLISLYLLVFTFATRVRDTRLMIR--IVLTALDSYSLLQDVIKCALDTHE 93

Query: 199 PADGRQLTLLRVLDVGEGLRQDLQAV 276
              G  L  L   + G  L+Q ++ V
Sbjct: 94  WTRGIYLDCLIYFESGSSLKQLMEIV 119


>SB_15430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 202 ADGRQLTLLRVLDVGEGLRQDLQAVDAGPVVRRHRVRAQE 321
           +D R  TL+RV ++G+G R      +  PV++ +  R QE
Sbjct: 99  SDQRGKTLIRVRNLGKGGRCKAALAEIDPVIQENTERVQE 138


>SB_28616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 499 HDWSPGTIVGSVADFATSSRQXXXGTLDEPPAXA 600
           H+WS G +  S  DFA+S+ +     + + P  A
Sbjct: 25  HEWSDGVLANSFRDFASSTTEDRKWLIFDGPVDA 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,090
Number of Sequences: 59808
Number of extensions: 247102
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)