Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_T7_C03
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    31   0.91 
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ...    30   1.6  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    30   1.6  
At1g68730.1 68414.m07855 zinc finger (DNL type) family protein c...    30   1.6  
At3g53440.2 68416.m05898 expressed protein                             30   2.1  
At3g53440.1 68416.m05897 expressed protein                             30   2.1  
At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) conta...    29   3.7  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   4.9  
At1g64340.1 68414.m07291 hypothetical protein                          28   8.5  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 656 LACGSQAFIATLLFDPSMSALPIIAKQNSPSVGLFT 549
           + C S + +  LL  P +  L  I+ QN P+VGLFT
Sbjct: 1   MECSSVSVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
           (SPL7) identical to squamosa promoter binding
           protein-like 7 [Arabidopsis thaliana] GI:5931635;
           contains Pfam profile PF03110: SBP domain
          Length = 775

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 519 TVVRQVSFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL-CLNASKAEA 343
           T+V+++    L+ C CD +      N      +H   ++   +K P AGL C    +A+ 
Sbjct: 632 TLVKKMEPDSLVHCTCDCDVRLLHENMDLASDIHRKHQSPIESKDPEAGLDCKERIQADC 691

Query: 342 SLAESGKD 319
           S    GK+
Sbjct: 692 SPDSGGKE 699


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 104 KSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 277
           K S +  +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 142 KESQEVIKPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g68730.1 68414.m07855 zinc finger (DNL type) family protein
           contains Pfam profile PF05180: DNL zinc finger
          Length = 170

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = +2

Query: 17  FYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTD 196
           FY+      +L+RS+    +   TP+Q  +S + +      ++L PD  S D+    +  
Sbjct: 39  FYKQQNPISALHRSKTTRVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDS---AEVA 95

Query: 197 SIDLRDPNGLRRRVSRFECET------RLVKSHCLE 286
           SID++ P   R     F C +      RL+  H  E
Sbjct: 96  SIDIKLPR--RSLQVEFTCNSCGERTKRLINRHAYE 129


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 101 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 280
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 281 LEPPDSRGSTVSIS 322
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = +2

Query: 101 RKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHC 280
           RKS+    +P  R+     L++RD++VK + D     +P    RR        RLV S  
Sbjct: 4   RKSTVVLPQPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSD 63

Query: 281 LEPPDSRGSTVSIS 322
               DSR   ++IS
Sbjct: 64  SPIEDSRSKKLNIS 77


>At5g41150.1 68418.m05002 repair endonuclease (RAD1) (UVH1) contains
           Pfam PF02732 : ERCC4 domain; contains TIGRFAM TIGR00596:
           DNA repair protein (rad1); almost identical to 5' repair
           endonuclease (GI:8926611) [Arabidopsis thaliana]
          Length = 956

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
 Frame = +2

Query: 38  GLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDP 217
           G S+ R +H+A + + +  ++   +TD +   +  E + D  S      KK       DP
Sbjct: 492 GSSVGRQEHEALMAAASSIRKLGKTTDMASGNNNPEPHVDKASCTKGKAKK-------DP 544

Query: 218 NGLRRRVSRFECETRLVKSHCLEPPDS--RGSTVSISLPDSA 337
             LRR +     +T   K   L  P++  + +  S S P  A
Sbjct: 545 TSLRRSLRSCNKKTTNSKPEILPGPENEEKANEASTSAPQEA 586


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +2

Query: 95  QERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKS 274
           +E K+S D S+  H  E    + S  A  KK+ +S+  +D    +  +S  E     +++
Sbjct: 95  EEIKASVDESDLTHMREKSAYV-SALAEAKKREESLK-KDVGIAKECISSLEKTLHEMRA 152

Query: 275 HCLEPPDSRGSTVS 316
            C E   S GST+S
Sbjct: 153 ECAETKVSAGSTMS 166


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 737 DCESTXYRSFSIKSFSKR 684
           DCEST Y SF + SF+++
Sbjct: 124 DCESTLYDSFELNSFNRQ 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,552,523
Number of Sequences: 28952
Number of extensions: 369111
Number of successful extensions: 957
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)