Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_T7_B21
(823 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 39 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 39 0.005
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c... 36 0.032
At4g03000.2 68417.m00408 expressed protein contains similarity t... 35 0.075
At4g03000.1 68417.m00407 expressed protein contains similarity t... 35 0.075
At5g11850.1 68418.m01385 protein kinase family protein contains ... 30 1.6
At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3 d... 30 1.6
At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) fa... 30 2.1
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 30 2.1
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 30 2.1
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 29 2.8
At2g01420.1 68415.m00062 auxin transport protein, putative simil... 29 2.8
At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containi... 28 6.5
At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containi... 28 6.5
At5g63550.1 68418.m07976 expressed protein 28 8.6
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 28 8.6
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 28 8.6
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 603 RAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKPRKGRR*SHQGVDR-ER 427
R + SP PR+RR D A R + RG+RS P V PR+GR S R R
Sbjct: 108 RGSVRRRSPSPRRRRSPDYGYAR-RSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 166
Query: 426 KNGPR 412
++ PR
Sbjct: 167 RDSPR 171
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 603 RAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKPRKGRR*SHQGVDR-ER 427
R + SP PR+RR D A R + RG+RS P V PR+GR S R R
Sbjct: 108 RGSVRRRSPSPRRRRSPDYGYAR-RSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSR 166
Query: 426 KNGPR 412
++ PR
Sbjct: 167 RDSPR 171
>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
cyclin 3a [Arabidopsis thaliana] GI:509425; contains
Pfam profiles PF00134: Cyclin, N-terminal domain,
PF02984: Cyclin, C-terminal domain
Length = 437
Score = 35.9 bits (79), Expect = 0.032
Identities = 23/57 (40%), Positives = 35/57 (61%)
Frame = -1
Query: 334 QASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSXSPSEVKSIVPAFSFESER 164
+AS + T AKK+ T +++ +R+TRSR + L VS SPS+ PAF E++R
Sbjct: 3 RASSKHT-NAKKEAISTSKIRDNNVRVTRSRAKALGVSNSPSK-----PAFKHETKR 53
>At4g03000.2 68417.m00408 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 34.7 bits (76), Expect = 0.075
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 367 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSXS 215
+E+ + R +Q E TIK + + L LN +Q+ T + RRLE+ S
Sbjct: 514 KEEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQS 564
>At4g03000.1 68417.m00407 expressed protein contains similarity to
hypothetical proteins
Length = 814
Score = 34.7 bits (76), Expect = 0.075
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 367 REKGQNGRATRQASERKTIKAKKKETLTLNQQEDQMRMTRSRKRRLEVSXS 215
+E+ + R +Q E TIK + + L LN +Q+ T + RRLE+ S
Sbjct: 514 KEEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQS 564
>At5g11850.1 68418.m01385 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K delta-1 protein kinase GI:2253009
Length = 880
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = -3
Query: 362 EGAKRTRHETSQRTQNDQSEEKGNFDLESTGRSDAHDEVQEATAGGQ 222
E + E+ Q++ K NFDL++TG++ + + ++ TA G+
Sbjct: 535 ESERNPTAESYQQSVEVDLSMKRNFDLDNTGKASSSENMEVGTADGE 581
>At1g80930.1 68414.m09495 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q9P6R9 Cell
cycle control protein cwf22 {Schizosaccharomyces pombe};
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 900
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = -2
Query: 633 DGTQVAFPKVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVVEKPRKGRR* 454
DG KVR K++ D +R + D EAN RGKR V+ G R
Sbjct: 65 DGEGRRGDKVRRKETSDDEELARRSRKDRKEANSGSEDDRGKRIE-----VDSDGDGERR 119
Query: 453 SHQGVDRERKNGPRHSQEE 397
++G + +R S EE
Sbjct: 120 VNKGRNTDRVRADTSSDEE 138
>At4g17910.1 68417.m02669 zinc finger (C3HC4-type RING finger) family
protein / pentatricopeptide (PPR) repeat-containing
protein contains Pfam domains PF01535: PPR repeat and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1208
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 326 RTQNDQSEEKGNFDLESTGRSDAHDEVQEATAGGQXLAFGSEKHRA 189
R D EE+GN+DLE+ R D + ++GG L R+
Sbjct: 1158 RISRDGEEEEGNYDLENGNREKLVDLKRSFSSGGLVLGTQGRTRRS 1203
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 645 HKGLDGTQVAFPKVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVV-EKP 472
++ L+G Q +++ K+K PR+ RKV A ++ +L + + P+V EKP
Sbjct: 102 NRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2
Query: 645 HKGLDGTQVAFPKVRAKKSKDSPVPRKRRKVDAPEANERQLRSRGKRSTPATPVV-EKP 472
++ L+G Q +++ K+K PR+ RKV A ++ +L + + P+V EKP
Sbjct: 102 NRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKP 160
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = -3
Query: 389 GDNQAGA--QGEGAKRTRHETSQRTQNDQSEEKGNFDLESTGRSDAHDEVQEATAGGQXL 216
G Q+G+ QG+ A + + S T +++++ G ++ S A DE + T+GG
Sbjct: 142 GKQQSGSSEQGDIASQGSNAASGTTLQNENQKVGEESVKRRRVSTAKDETEGHTSGGDFF 201
Query: 215 AFGSEKHRAGVLVRV 171
A G+ VR+
Sbjct: 202 ATTPSLVSVGLGVRI 216
>At2g01420.1 68415.m00062 auxin transport protein, putative similar
to auxin transport protein PIN7[Arabidopsis thaliana]
gi|5817305|gb|AAD52697
Length = 612
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 389 GDNQAGAQGE-GAKRTRHETSQRTQNDQSEEKGNFDLESTGRSDAHDEVQEATAG 228
GDN A Q E GAK R S DQ + G D+ + E+++ATAG
Sbjct: 369 GDNVATEQSEQGAKEIRMVVS-----DQPRKSGGDDIGGLDSGEGEREIEKATAG 418
>At1g76510.2 68414.m08903 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 434
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -1
Query: 388 EITKPVLREKGQNGRATRQASERKTIKAKKKETLT 284
E+T+P+++EKG N +T + K I +K++T T
Sbjct: 288 EVTEPIVKEKGLN--STPKQKNLKNIGVQKQKTTT 320
>At1g76510.1 68414.m08902 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 434
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -1
Query: 388 EITKPVLREKGQNGRATRQASERKTIKAKKKETLT 284
E+T+P+++EKG N +T + K I +K++T T
Sbjct: 288 EVTEPIVKEKGLN--STPKQKNLKNIGVQKQKTTT 320
>At5g63550.1 68418.m07976 expressed protein
Length = 530
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 356 AKRTRHETSQRTQNDQSEEKGNFDLESTGRSDAHDE 249
AKR R + +D E K D +S G +D H+E
Sbjct: 273 AKRKRQTKKRDLPSDTEEGKDEGDADSEGTNDPHEE 308
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 365 GEGAKRTRHETSQRTQNDQSEEK-GNFDLESTGRSDAHDEVQE 240
G+G K + E Q+ ++ +EE+ GN + EST + + ++ +E
Sbjct: 268 GKGEKSMKDENGQQEEHTTAEEESGNKEEESTSKDENMEQQEE 310
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 377 AGAQGEGAKRTR-HETSQRTQNDQSEEKGNFDLESTGRSDAHDEVQEATAGGQXLAFG 207
AGA GE AK+T+ + +D+ + D ES G SD Q + G L G
Sbjct: 45 AGANGESAKKTKGRGFREEKDSDRQRRLSSRDFESLG-SDGRPGPQRSVEGWIILVSG 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,636
Number of Sequences: 28952
Number of extensions: 241546
Number of successful extensions: 1000
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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